Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16890 464 / 1e-159 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT3G53700 117 / 3e-28 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 111 / 2e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G06000 108 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT1G79540 108 / 2e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 107 / 8e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 105 / 1e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 105 / 3e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 105 / 3e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 104 / 4e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043104 [exp] 762 / 0 AT3G16890 720 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Lus10015397 [exp] 114 / 9e-28 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033522 [exp] 114 / 6e-27 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020852 [exp] 113 / 9e-27 AT1G79540 665 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022401 [exp] 110 / 6e-26 AT5G01110 281 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025533 [exp] 108 / 4e-25 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 107 / 6e-25 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018113 [exp] 107 / 1e-24 AT5G01110 293 / 3e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021645 [exp] 107 / 1e-24 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108300 [exp] 535 / 0 AT3G16890 771 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Potri.006G049400 [exp] 140 / 6e-36 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G077400 [exp] 124 / 9e-31 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G056400 [exp] 114 / 3e-27 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 113 / 5e-27 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.011G057900 [exp] 111 / 1e-26 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050300 [exp] 111 / 2e-26 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 110 / 4e-26 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 110 / 6e-26 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 110 / 7e-26 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032647 pacid=23146292 polypeptide=Lus10032647 locus=Lus10032647.g ID=Lus10032647.BGIv1.0 annot-version=v1.0 ATGACAGGGTTTGCACTAGCTCCTCGAGCTGCTTCGCCTGCACTCAAAGCAACTATTTCTCACTCGCGCCACACGTTCAATCCTTCCTCCAGGTTCAATT CCGGAACGCAATTTGCCATCAACAACACTTCAGGAGGAGATCCTTCAACCGGTAATGCGCATCTATCCGACTCAATCTCAAGATACTCCCACGCCACTGA TAAAAACCAGCATAAAACAGTCGATCGAAGTTACATTTCTCGACTTCTCTCGAGAAAGGACTGGTCTGTGTTGCTGAACCACGAGCTGCGAGCCAAGAGG ATAGTGTTGAACTCGCAGTTCACGGTTAGCGTTATGCAGAATCAGGAGAATCCATTGATGGCATTAAAGTATTACATCTGGATTTCTAGCATCGACCCTC ATTTTGCCAAAGACCAATCGGTTAGAGGCTCTTTAGCTAACTCCCTTTACCGTAAGGGTCCTGTTCTTTTGTCAGCTGAGTTGCTTAGAGATATTAAAGA CTCTGGATTCCACGTTAGTGAAGATTTGGTTTGCGTTTTGTTCTCTAGTTGGGGCAGGTTAGGATTGGCTAAGTATTGCAATGAAGTATTTGGACAGATT TCCTATCTTGGTATTAGTCCTAGCACGAGGCTATATAATGCAGTTATTGATGCGTTGGTGAAGGCAAATTCTCTTGATCTGGCGTACTCAAAGTTCCAGC AGATGGCTTCTGATAATTGCAAGCCTGACAGATTCACTTATAACATTCTTATCCATGGAGTTTGTCGGGTTGGGGTGATGGACGAGGCGCTCCGGCTCGC TAAGCAAATGGAAGGTCACGGATATTTTCCTAATGTTTTCACCTACACCATCTTAATTGATGGATTCTGCAATGCCAATAGGATCGATGAGGCATTTGGT ATTTTCGAGACGATGAAGGCTCGGAATGTTCACCCTAATGAAGCTACTGTTAGATCGCTGGTTCATGGCGTGTTTTGTACCCTTGCCCCAGTTAAGGCAT TTGAAGTTATGGTTGCTTTCATCGACAGGGAGTCTATCTTAAGGAAGTTGGCTTGTGACACGTTGCTTTGTTGCCTATCTGACAACTCCATGGCAAAAGA AGCTGGTTCCTTGTTGAGGAAACTTGGGGACACTGGTTACGTACCAGATAGTTCTGCGTTTAACACTGCGATGACTTGTTTGATCAAAGGCTTGGATCTT AGTGAGAATGTAAGATCCTAG
AA sequence Show only first row Show all	>Lus10032647 pacid=23146292 polypeptide=Lus10032647 locus=Lus10032647.g ID=Lus10032647.BGIv1.0 annot-version=v1.0 MTGFALAPRAASPALKATISHSRHTFNPSSRFNSGTQFAINNTSGGDPSTGNAHLSDSISRYSHATDKNQHKTVDRSYISRLLSRKDWSVLLNHELRAKR IVLNSQFTVSVMQNQENPLMALKYYIWISSIDPHFAKDQSVRGSLANSLYRKGPVLLSAELLRDIKDSGFHVSEDLVCVLFSSWGRLGLAKYCNEVFGQI SYLGISPSTRLYNAVIDALVKANSLDLAYSKFQQMASDNCKPDRFTYNILIHGVCRVGVMDEALRLAKQMEGHGYFPNVFTYTILIDGFCNANRIDEAFG IFETMKARNVHPNEATVRSLVHGVFCTLAPVKAFEVMVAFIDRESILRKLACDTLLCCLSDNSMAKEAGSLLRKLGDTGYVPDSSAFNTAMTCLIKGLDL SENVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032647 [exp]	0	1
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	4.2	0.9387
AT3G55160			unknown protein		Lus10007253 [exp]	5.7	0.9442
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	6.0	0.9433
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	8.0	0.9251
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	12.5	0.9314
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	13.6	0.9325
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	18.1	0.9332
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	19.3	0.9134
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	20.5	0.9304
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	20.7	0.9210

Compare expression of checked genes

Lus10032647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.