Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16890 224 / 3e-69 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT1G09820 136 / 8e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 136 / 1e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G16640 130 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 130 / 9e-35 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 130 / 1e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74580 129 / 3e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 127 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 127 / 1e-33 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT3G16710 126 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043104 [exp] 462 / 1e-161 AT3G16890 720 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Lus10010410 [exp] 135 / 2e-36 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 131 / 4e-35 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036865 [exp] 129 / 6e-35 AT1G12700 273 / 1e-83 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10016727 [exp] 129 / 2e-34 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 129 / 3e-34 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 129 / 4e-34 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 127 / 2e-33 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 125 / 1e-32 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108300 [exp] 255 / 2e-80 AT3G16890 771 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Potri.013G034300 [exp] 134 / 8e-37 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 135 / 2e-36 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 135 / 2e-36 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 135 / 2e-36 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 134 / 2e-36 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068400 [exp] 132 / 3e-36 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 134 / 4e-36 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G166001 [exp] 133 / 5e-36 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G021200 [exp] 133 / 5e-36 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032648 pacid=23146394 polypeptide=Lus10032648 locus=Lus10032648.g ID=Lus10032648.BGIv1.0 annot-version=v1.0 ATGGTGAAAGCTGGCTTTCTGGCTACTGCTGTTTCCTATAACATGGTGATTGATTGTTTGTGCAAAGTTAATAAGATAGACAAAGCAGACAAAGTTTTCC AAGAGATGCAGCAAAAAGGTATCACCCCGAACCTTGTTACATTCAACACTCTTCTAAGTGGTTATTGCAAGAATGGAGAGGTTCGTGGGGCCAGGAAACT GTTGGAGATGCTCTTAGAATACGGGTTTAAACCAGACATATTCACTTTTACTTCAATAATCGATGGCCTTTCCCGAGTAAAACATCTTGAGGATGCATTA GGCTGTTTCAGGGAAATGGTAGAGTGGGGTGTCTCTCCTAATGCTGTGACGTACAATATATTGCTGCGATCCCTGGCTGTCAATGGTGATGTTGCTGGTT CTATTGAAATCTTAAGGAAGATGCAAAGAGATGGAATAGATCCTGATGTTTCTGCCTTCAATGCTCTCGTCCAACGTTTTTGTAGGATGGGAAAAGTGAA GAAAGCACATAACCTTTTTGCTTCCATGCTGGCATTAAATTTGGTTCCTGATACTCATATGAAGACACTCTCTGAATTAAGGAGACCTGATGAAGCCAAG GAGATACTTGACTCCATGGAAGCTAATAGTTCTCTTCCAGACATGCAATTTGATTGTGGACAATCTACTCCGGCAGGGCCACTATGTCGAAGCTGA
AA sequence Show only first row Show all	>Lus10032648 pacid=23146394 polypeptide=Lus10032648 locus=Lus10032648.g ID=Lus10032648.BGIv1.0 annot-version=v1.0 MVKAGFLATAVSYNMVIDCLCKVNKIDKADKVFQEMQQKGITPNLVTFNTLLSGYCKNGEVRGARKLLEMLLEYGFKPDIFTFTSIIDGLSRVKHLEDAL GCFREMVEWGVSPNAVTYNILLRSLAVNGDVAGSIEILRKMQRDGIDPDVSAFNALVQRFCRMGKVKKAHNLFASMLALNLVPDTHMKTLSELRRPDEAK EILDSMEANSSLPDMQFDCGQSTPAGPLCRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032648 [exp]	0	1
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020918 [exp]	2.0	0.8566
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10043104 [exp]	18.2	0.8476
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	22.4	0.8218
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	24.6	0.8210
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	25.8	0.8249
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	30.7	0.8073
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	34.5	0.8123
AT5G08340			Nucleotidylyl transferase supe...		Lus10028973 [exp]	40.4	0.7655
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	40.7	0.8029
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	40.8	0.8227

Compare expression of checked genes

Lus10032648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.