Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48030 845 / 0 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 834 / 0 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G16950 239 / 4e-72 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 236 / 3e-70 dihydrolipoyl dehydrogenases (.1) AT3G24170 159 / 5e-43 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 142 / 2e-36 ATGR2, EMB2360, GR glutathione reductase (.1) AT5G03630 47 / 2e-05 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT1G63940 46 / 6e-05 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G09940 43 / 0.0004 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G52880 43 / 0.0006 ATMDAR1 monodehydroascorbate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043103 [exp] 945 / 0 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 897 / 0 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 894 / 0 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 236 / 9e-71 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 234 / 8e-70 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10011734 [exp] 177 / 2e-49 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 154 / 1e-40 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 138 / 6e-35 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10000758 [exp] 136 / 1e-34 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100800 [exp] 842 / 0 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 788 / 0 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G142100 [exp] 237 / 4e-71 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 235 / 2e-70 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.003G178200 [exp] 168 / 3e-46 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 168 / 5e-46 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 137 / 1e-34 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.001G099600 [exp] 45 / 0.0001 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.006G114800 [exp] 42 / 0.0009 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10032649 pacid=23146440 polypeptide=Lus10032649 locus=Lus10032649.g ID=Lus10032649.BGIv1.0 annot-version=v1.0 ATGGCGATGGCAAGCTTCGCGAGGAGAAAGGCTTACCTTCTCACCAGAAACTTCTCCAATTCCAACCCTGACGCCCTCCGCTTCTCCTTCTCCCTCACAC GCGGCTTCGCTTCCTCCTCCGGATCCGATGACAACGACGTCGTCGTCATCGGCGGCGGCCCCGGCGGTTACGTCGCAGCCATCAAGGCCGCCCAGCTCGG CCTCAAAACCACCTGCATCGAGAAGCGCGGCACGCTCGGCGGCACCTGTCTCAACGTCGGATGCATCCCTTCCAAGGCACTTCTCCATTCATCCCACATG TTCCATGAAGCACAACACTCGTTTGCCAACCATGGCGTTAAGATTTCTTCCGTTGAGGTTGATTTGCCGGCCATGATGGGTCAAAAGGACAAAGCAGTAG CAAACCTTACCAAGGGCATTGAAGGTTTGTTCAAGAAGAACAAGGTGAACTACGTCAAAGGTTACGGAAAGTTCGTATCGCCTAACGAAGTATCGGTTGA TACCATCGATGGAGGTACCACTGTTGTCAAAGGCAAGAACATCATCGTCGCCACCGGTTCTGATGTGAAGACATTACCCGGGATCACCATCGACGAGGAG AAGATTGTGTCGTCTACAGGCGCTTTGGCTTTGAAACAAATCCCCAAGAAGCTTATAGTTATTGGGGCTGGCTACATTGGGCTCGAGATGGGTTCTGTCT GGTGCCGCCTTGGTTCCGAAGTCACTGTCGTGGAGTTCGGACCGGATATTGTCCCGGCCATGGATGGGGAAGTTCGTAAGCAATTTCAACGGTCGCTAGA GAAGCAGAAGATGAACTTCATGCTCAAGACTAAGGTGGTGGGAGTTGATAGCTCTGGAGACGGTGTGAAGTTGACTCTAGAGCCTGCTTCTGGTGGTGAT CAGACAATCCTCGAGGCGGATGTGGTTCTAGTATCTGCTGGAAGAGTCCCATTTACGTCCGGTCTTGGACTTGAGGAGATCGGTGTAGAAACCGATAAGG GGGGAAGGATCTTGGTGAACGAAAAGTTCGAAACAAATGTGAAAGGTGTGTTCGGTATCGGAGATGTGATTCCAGGACCGATGTTGGCACACAAGGCAGA AGAGGATGGGGTTGCTTGTATCGAATTCATAGCCGGAATTCACGGCCATGTGGACTACGATAAGGTTCCGGGAGTCGTGTATACGCACCCCGAGGTTGCA TCAGTTGGCAAGACAGAAGAGCAGGTGAAAGCCCTTGGCGTCGAGTACCGGGTAGGGAAGTTCCCTTTCATGGCCAACAGCCGCGCTAAAGCAATAGATG ATGCTGAAGGGATAGTTAAGGTGTTGACTGAGAAAGAGACTGACAAGATATTAGGAGTTCATATCATGGCACCGAACGCCGGAGAGCTCATTCACGAGGC GGCATTGGCGATTAACTATGATGCTTCGAGCGAGGATATAGCTCGTATCTGCCATGCGCATCCGACGATGAGTGAGGCGTTGAAGGAGGCTGCCATGGCC GCCCATGACAAGCCTATTCACATTTGA
AA sequence Show only first row Show all	>Lus10032649 pacid=23146440 polypeptide=Lus10032649 locus=Lus10032649.g ID=Lus10032649.BGIv1.0 annot-version=v1.0 MAMASFARRKAYLLTRNFSNSNPDALRFSFSLTRGFASSSGSDDNDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHM FHEAQHSFANHGVKISSVEVDLPAMMGQKDKAVANLTKGIEGLFKKNKVNYVKGYGKFVSPNEVSVDTIDGGTTVVKGKNIIVATGSDVKTLPGITIDEE KIVSSTGALALKQIPKKLIVIGAGYIGLEMGSVWCRLGSEVTVVEFGPDIVPAMDGEVRKQFQRSLEKQKMNFMLKTKVVGVDSSGDGVKLTLEPASGGD QTILEADVVLVSAGRVPFTSGLGLEEIGVETDKGGRILVNEKFETNVKGVFGIGDVIPGPMLAHKAEEDGVACIEFIAGIHGHVDYDKVPGVVYTHPEVA SVGKTEEQVKALGVEYRVGKFPFMANSRAKAIDDAEGIVKVLTEKETDKILGVHIMAPNAGELIHEAALAINYDASSEDIARICHAHPTMSEALKEAAMA AHDKPIHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	1.7	0.9593
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	2.4	0.9380
AT1G21370			unknown protein		Lus10029764 [exp]	2.8	0.9266
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	4.5	0.9061
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	4.9	0.9346
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	4.9	0.9212
AT5G40250			RING/U-box superfamily protein...		Lus10012987 [exp]	5.0	0.8822
AT1G69430			unknown protein		Lus10036796 [exp]	5.2	0.9110
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	5.9	0.9166
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	6.5	0.8866

Compare expression of checked genes

Lus10032649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.