Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06440 657 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 554 / 0 GALT1 galactosyltransferase1 (.1) AT1G74800 340 / 7e-108 Galactosyltransferase family protein (.1) AT5G62620 333 / 6e-105 Galactosyltransferase family protein (.1.2) AT1G27120 322 / 7e-101 Galactosyltransferase family protein (.1) AT4G21060 299 / 4e-92 Galactosyltransferase family protein (.1.2) AT2G26100 81 / 4e-16 Galactosyltransferase family protein (.1) AT3G14960 77 / 4e-15 Galactosyltransferase family protein (.1) AT1G53290 77 / 5e-15 Galactosyltransferase family protein (.1) AT2G32430 64 / 1e-10 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043102 [exp] 1111 / 0 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 566 / 0 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 563 / 0 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 541 / 0 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 537 / 0 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10004256 [exp] 323 / 5e-101 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 316 / 1e-98 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 301 / 1e-92 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 300 / 2e-92 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151600 [exp] 918 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 590 / 0 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 567 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.015G067600 [exp] 336 / 5e-106 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 322 / 2e-100 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 311 / 1e-96 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 306 / 1e-94 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 300 / 1e-92 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 81 / 4e-16 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 77 / 5e-15 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10032650 pacid=23146274 polypeptide=Lus10032650 locus=Lus10032650.g ID=Lus10032650.BGIv1.0 annot-version=v1.0 ATGAAGAAATGGTCAGGCGGGGTGGTGATGGTTGCGCTTGCATTTATATTCATCTTTAGTTACACCCTCATGTCAACTTCAACACAACAACAGCCACCAC ACAAGACTGATGATAAGAACAACAAGCAGTCTGCTTATGATTTCTTCCGAACTCATCCACCACCATCCAACAACAATGACTCTCTTTCAAAGGGAAATAT CGAATTTGATTCTATGGTTGGACCTCCTCCACCGCCATCATCAAACAAGCCAGCGTTTCGAAATGTCGAAGGGCTCAGTGACTTGTATGCTTTGAACAAC GTCTCCAGGGAAGAGTCAAAAGCATTCCTTGTGTGGTCCGAATTGCGTATGCTTTTGTCCAGGTCGGATGCATTGCCTGAAACGGCACAGGGGATTAAGG AGGCTTCTATAGCTTGGAAGGAGCTGGTACCTTTAATAGAGGAGGAGAGAGCTGCTAAGCTTCTTAACCGCGATAAGTCGGAGGACAAGAGCTGTCCTTA CTCTGTAAGTACAGTTGACTTGCTGCAAGTACCAAACACCGAAACCATTCTCGATATCCCCTGTGGTCTCATTGAAGATTCTTCTTTCACATTAGTTGGA ATTCCTGGTGGACAAAACCACAGCTTCCAGATCGAACTCACCGGATCCGAACTTGAAGGAGAGACTCAGCCTTCAGTTATCATGCTCTATAAAGTGCGAA TACCTGGTGAGAATATGACAGAGGGACCATTCATTATTCAGAATTCTTGGACTAGAGACGGTGGCTGGGGCAATGAGGAAAGATGCCCCTCTCATAGTTC TGCTAATGGTCAGAAAGAGCTAAATGTTTCAGTTGATGGACTCGTCAAATGCAATGAAGAAATAGTTGGAAGCACCGACCATAATGCAAGTCGTCCTGCT GGCGATGCAGCGGGTAATAGCTCCAGAGAAAGTGTTCATACCGATGCTAACTTACCGTTCGTTGAAAGAAATCTAGTTGCTGCTACATTATGGTTGGGAC CAGAAGGATTCCATATGACTGTCAATGGGAGGCATGAAACTTCTTTTTCATTTCGAGAGAAACTTGAACCATGGTCAGTAAGCAGAGTGAAAGTATCTGG GAGTTTCGATGTCCTATCTGCATTAGCCAAAGGTTTGCCTGTTCCCGAAGATCACGATTTAGTTGCTGATATTGAGCATCTGAAAGCTCCACCAGCCGGA AAGAAGAGACTGCTGATGCTGGTCGGGGTCTTCTCCACCGGAAATAACTTCCAGCGGAGAATGGCACTCAGGAAGACTTGGATGCAGTATGAAGCTGTAC GTTCCGGGAAAGTGGCTGTCAGGTTCTTCATTGGTCTCCACAAGAATGCTCAAGTGAATCTTGAGCTGTGGAAAGAAGCTCAAGCGTATGGAGATATACA ACTGATGCCTTTTGTTGATTACTATAGCCTTATCAGTTTGAAAACGGTTGCCATCTGCATAATGGGGACCAAAATACTCCCTGCAAAGTACATCATGAAA ACAGATGACGATGCATTTGTTAGGATTGATGAAGTTCTCGCAAGTCTCAAAGAAAAGCCAGTAAAGGGTCTCTTGTACGGTCTTATTTCCTACGATTCAG CGCCCCACAGGGACAAAGACAGCAAATGGTACATCAGTGAGCAGGAATGGGCGCATGCTGCTTATCCACCATGGGCACACGGTCCTGGGTACGTAATCTC AAGAGATGTAGGCAAATTCATAGTCCAAGGCCATCAGCAAAGGGATCTCAAGCTTTTCAAACTTGAGGATGTGGCAATGGGGATATGGATTGATGAGCTG AAGCAAAAGGGCCAGCAGGTGAATTACGCGAGTGACGACAGGTTCCACAATGCAGGGTGTGAACCCAATTACGTACTTGCCCATTACCAGAGTCCGCGGC TGGTACTGTGTCTTTGGGAGAAGTTGCAGAAGGAGCATCAGCCCGCCTGCTGCGAGTAA
AA sequence Show only first row Show all	>Lus10032650 pacid=23146274 polypeptide=Lus10032650 locus=Lus10032650.g ID=Lus10032650.BGIv1.0 annot-version=v1.0 MKKWSGGVVMVALAFIFIFSYTLMSTSTQQQPPHKTDDKNNKQSAYDFFRTHPPPSNNNDSLSKGNIEFDSMVGPPPPPSSNKPAFRNVEGLSDLYALNN VSREESKAFLVWSELRMLLSRSDALPETAQGIKEASIAWKELVPLIEEERAAKLLNRDKSEDKSCPYSVSTVDLLQVPNTETILDIPCGLIEDSSFTLVG IPGGQNHSFQIELTGSELEGETQPSVIMLYKVRIPGENMTEGPFIIQNSWTRDGGWGNEERCPSHSSANGQKELNVSVDGLVKCNEEIVGSTDHNASRPA GDAAGNSSRESVHTDANLPFVERNLVAATLWLGPEGFHMTVNGRHETSFSFREKLEPWSVSRVKVSGSFDVLSALAKGLPVPEDHDLVADIEHLKAPPAG KKRLLMLVGVFSTGNNFQRRMALRKTWMQYEAVRSGKVAVRFFIGLHKNAQVNLELWKEAQAYGDIQLMPFVDYYSLISLKTVAICIMGTKILPAKYIMK TDDDAFVRIDEVLASLKEKPVKGLLYGLISYDSAPHRDKDSKWYISEQEWAHAAYPPWAHGPGYVISRDVGKFIVQGHQQRDLKLFKLEDVAMGIWIDEL KQKGQQVNYASDDRFHNAGCEPNYVLAHYQSPRLVLCLWEKLQKEHQPACCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	1.0	0.8886
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	2.8	0.8722
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	4.2	0.8732
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	5.3	0.8328
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	5.5	0.8412
AT3G12020			P-loop containing nucleoside t...		Lus10016236 [exp]	7.5	0.8471
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	8.5	0.8418
AT2G27900			unknown protein		Lus10009613 [exp]	9.2	0.8753
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	10.6	0.8144
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	12.4	0.8483

Compare expression of checked genes

Lus10032650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.