Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17310 478 / 1e-159 DRM3, AtDRM3 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14620 271 / 2e-81 DMT7, DRM2 domains rearranged methyltransferase 2 (.1) AT5G15380 261 / 8e-78 DRM1 domains rearranged methylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043099 [exp] 436 / 5e-147 AT3G17310 148 / 9e-39 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10014552 [exp] 285 / 1e-86 AT5G14620 581 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10032136 [exp] 278 / 3e-84 AT5G14620 580 / 0.0 domains rearranged methyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152200 [exp] 666 / 0 AT3G17310 528 / 3e-179 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G347000 [exp] 298 / 3e-91 AT5G15380 619 / 0.0 domains rearranged methylase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032652 pacid=23146348 polypeptide=Lus10032652 locus=Lus10032652.g ID=Lus10032652.BGIv1.0 annot-version=v1.0 ATGCAACATGTGAGCAATCCAAAGAATTACCCGAACGGCGGGAGCTCTTTGGATCCAGAACGCGACGGACTGTATGAGCCAAAGCCTGAGGTCTTGGATT TCATCTTCCCCTCCGACGCTGTCTACTCTATGCAAGTTGGGGACAACACCGCAAGTTCATCTGGAAACCATGTACGTTCGCTTCTCACTGGGATGGGGTT CACACCTTCACTTGTTGATAAGGTGATTGAGGAAAACGGTGATGAGAACATGGATTTGCTGTTGGAGATTCTCGTGGAAAAATCTAAGTCAAGCACTCAG TCATCGGATTCTTTAGACAACCTGTTTGACGACAAGGAGGAAGATGGACCTGCTGCGTGTTCCAACATGCTGCCTCCACCAAAAGAGGAACCTGATGTAT ATACTGAAGTCGTGGATGAGCGAAAAGAATCCTTACTAAGGATGAACTTCACACTATCTGAAGTTGATTTCGCTATCAATAAGCTTGGTGACAATGCTTC AATAGGGGAATTAGTAGATTTCATCAGTGCTTTCCAAATGGCTCGCCATGTAGATGAAGGCACGCATGACATGCCTCAAAATCTTGATCAGGAAAACAAG GACGATAATGATGAAACCTTGTTTGGGACCATGGAGAAAACTCTTCAGTTGCTTGACATGGGTTTCTCTGAAAATGATATTTCGCGTGCAATTGAGAAGT TCGGGTCAGAACTCCCTGTTCCAGAACTGGCCAACTGCATTTGCGCCGAACAAGTTGGTGAAGCCTATGTTCCTATATCCCAGAATCCATCACGAATTAT TAGCACTAGTCCTTGCTTTGTTGAAGATCCATTAGTGGATCCAATAAACATGGAGAGCGAATACTTGACCCAAGAAGATACATCTCGCCGAAGAGATCCT AACAGGGAGGCAACTCGCAAAGGAAAAAAGCCAAGGCAGGTGCCCCCCGAAGAGAGTCCACATACACAATTTGGGTTTGGCACCGACACCGAAGACTATG AAGCAAAACTAAAACCAGAATATATTGATGGTTTCTTAAGCTCTTATCTTCAACCAGAATGCGAAGAAAAAGTGGTTGATCATGAAATTCCCAGCAGCTT CAGATCTTCTCGGAAGCCATTGAGTCAGGTGGCTGCAAGTCCTCCTTATTTCTTCTATGGCAATGTTACCAATCTGCCTACGGATTCCTGGTCTAAAATG TCGGAGTTCTTGCACGGCGTGGAACCTGAGTTTGTGAACACCCAGTTCTTCTCAGCATTGAAAAGGAGAGAAGGGTACCTCCACAATCTCCCTTTGGAGA ACAGGTTCCATATCCTTCCAAAGCCTCCAATGACCATCCAAGAGTCTATACCACAGTCAAAGCAATGGTGGCCGAACTGGGACACTAGGCGACAGCTAAC CTTCATCAACACTGATATTGTTGGGGTTTCTCAGGTTTGTGACAAGCTTGGGATGATGCTCCGTGAGTGCAGGGGCAAGCCCTCAGCTCAGCAGACGCGG GAACTCTTGCATTACTGCCAAAGATTAAACCTGACGTGGGATGGTCCAAACAGACTAGGTCCCATGGAACCGGACTATGTGGAGATCATCCTCGGTTACC AGCTTAACCACACAGAAGTTTCAGAAGTGAGTCTGGCCGAAAGGCTACAGTACCTCAGGTACAGCTACCAGATAGACACATTGGCCTACCATCTATCTGC TTTGAAGGCCATTTTCCCTCAGGGGATAACTATGCTGTCATTGTCCACTGGGATTGGCGGGGCAGAGGTGGCGCTGCACCGTCTTGGGGTGCATTTGAAG AGCTTGGTGTCGGTGGAGAATAGCGAGGCGAAGAGGAAGATTATGAAGAGGTGGTGGCAAAGCAGCGGGCAGACTGGGGAGTTGGAGCAGATAAATGGCG TGGATAAGCTGACAAGTAAAAAGCTGAAGGAACTTGTTGGGAAGTATGGGTGCTTCGACTTTGTTGTATGCCAAGACTCGTTCATGCAGAAGCCTCATAA AATCGTAAAAAAAGTGAGAGGCGCAGCAGCAGGGAGAAGTGTAGAGCCATCATCGTCTTCTTCGCCTAATTTTTACCTGTCGTTCGATTTCACAGAGTAT TGCGAGTTTGTTCGTGTGTTGCAGCTAGTACGTAGCCTACACCACAACAGAAGATGA
AA sequence Show only first row Show all	>Lus10032652 pacid=23146348 polypeptide=Lus10032652 locus=Lus10032652.g ID=Lus10032652.BGIv1.0 annot-version=v1.0 MQHVSNPKNYPNGGSSLDPERDGLYEPKPEVLDFIFPSDAVYSMQVGDNTASSSGNHVRSLLTGMGFTPSLVDKVIEENGDENMDLLLEILVEKSKSSTQ SSDSLDNLFDDKEEDGPAACSNMLPPPKEEPDVYTEVVDERKESLLRMNFTLSEVDFAINKLGDNASIGELVDFISAFQMARHVDEGTHDMPQNLDQENK DDNDETLFGTMEKTLQLLDMGFSENDISRAIEKFGSELPVPELANCICAEQVGEAYVPISQNPSRIISTSPCFVEDPLVDPINMESEYLTQEDTSRRRDP NREATRKGKKPRQVPPEESPHTQFGFGTDTEDYEAKLKPEYIDGFLSSYLQPECEEKVVDHEIPSSFRSSRKPLSQVAASPPYFFYGNVTNLPTDSWSKM SEFLHGVEPEFVNTQFFSALKRREGYLHNLPLENRFHILPKPPMTIQESIPQSKQWWPNWDTRRQLTFINTDIVGVSQVCDKLGMMLRECRGKPSAQQTR ELLHYCQRLNLTWDGPNRLGPMEPDYVEIILGYQLNHTEVSEVSLAERLQYLRYSYQIDTLAYHLSALKAIFPQGITMLSLSTGIGGAEVALHRLGVHLK SLVSVENSEAKRKIMKRWWQSSGQTGELEQINGVDKLTSKKLKELVGKYGCFDFVVCQDSFMQKPHKIVKKVRGAAAGRSVEPSSSSSPNFYLSFDFTEY CEFVRVLQLVRSLHHNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10032652 [exp]	0	1
AT4G24810			Protein kinase superfamily pro...		Lus10043122 [exp]	3.7	0.9017
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	17.3	0.8619
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	21.0	0.8535
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	26.4	0.8581
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	27.0	0.8537
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	31.4	0.8194
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10008884 [exp]	33.7	0.8310
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	33.8	0.8515
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	35.0	0.8297
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	35.4	0.8057

Compare expression of checked genes

Lus10032652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.