Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 423 / 2e-147 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 410 / 5e-142 Tyrosine transaminase family protein (.1) AT2G20610 406 / 2e-140 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28410 398 / 8e-137 Tyrosine transaminase family protein (.1) AT4G28420 375 / 4e-128 Tyrosine transaminase family protein (.1.2) AT2G24850 354 / 8e-120 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 298 / 2e-98 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 290 / 5e-95 Tyrosine transaminase family protein (.1) AT1G23310 97 / 8e-22 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G77670 94 / 6e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018626 [exp] 475 / 2e-167 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 471 / 5e-166 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 468 / 7e-165 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033659 [exp] 461 / 7e-162 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 460 / 2e-161 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033661 [exp] 458 / 8e-161 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 457 / 2e-160 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 424 / 9e-148 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 420 / 1e-141 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 501 / 4e-178 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 481 / 3e-170 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 479 / 3e-169 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 479 / 4e-169 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 472 / 1e-166 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 442 / 8e-155 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 427 / 1e-148 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 176 / 9e-54 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.005G175400 [exp] 97 / 9e-22 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G162800 [exp] 94 / 1e-20 AT1G17290 828 / 0.0 alanine aminotransferas (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10032654 pacid=23146277 polypeptide=Lus10032654 locus=Lus10032654.g ID=Lus10032654.BGIv1.0 annot-version=v1.0 ATGAAGAAATGGCGGTTTGAAGTAGCAGGGAACGACGACAAGGAAATGATAGGCAAGGCATCATCAACCACAATCAGAGGTGTTTACAATCGGATCGTGG ATAATCTGAACAAGAACGACCCGAGATCCGTTATCCAGCTCGGCCAAGGAGACCCTTCCGTCTTCTCTTGCTTCCGGCCCGATTCTGCGGTGGAAGCCGC CGTTAAGGAATCTCTTGAATCCGCTGACTACAATGGTTACGCCGAATCCCGTGGCATTCTTCCCGCCAGAAGGGCTGTGGCAGAGTACCTTAACAACGGA CTACCCTACAAACTAACGGCCGATGACGTGTTCTTAACCGTGGGATGCACCCAAGCAATTGAAGTGGCTATAACAGCATTGGCAAGGCCTGGAGCCAACA TCCTGCTTCCGAGACCAGGCTACCCGGACTACGAATCTTTTGCGACTCAGAGACTCCTCCAAATTCGTCACTATGATCTCCTACCGAACAAAGGGTGGGA CATCGACCTCGAAGCTGTAGAGGCCATCGCCGACGAAAATACCGTGGCCATAGCTGTTATAAATCCGGGGAATCCATGCGGGAATGTTTTCAGCTACGAC CGATTGTTGCAAGTTGCAGAGTTTGCAAGGAAGCTTGGGATATTGGTGATTGCTGACGAGGTTTACGGACATCTCGCTTATGGGGAGAAAGAGTTCGTAC CGATGGGGGTGTTCGGCTCGATTGTTCCGGTCCTGACGCTCGGGTCTCTCTCAAAACGATGGTTGGTTCCTGGTTGGCGACTCGGGTGGCTCGTCACTAC TGATCCTAACCGCATTCTTCTGCATTCAGGGATTGTAGAGACGATCAAGGACTGTGTCAACATCTCTGCCGATCCAGCAACAGTAATTCAAGGAGCAATG CCTCAGATGTTGAAGAGCTCCAATGGCGGTTTTTATGTAGAAACTAATAAGTTGATGAAAAGGGTTGCGGATCTCTGCTACGACAAATTTCAGGACATGC ATGGAATCAGTTGTCCCCGCAAAGCCGAGGGCGCCATGTCTATAATGATCAAATTGAATCTTTCTGAATTCGAAGCAATTGAAGATGATATGGAGTTTTG TCTCGCGCTATCGAAAGAAGAGTCTGTTATACTAATTCCAGGCAAAATATAA
AA sequence Show only first row Show all	>Lus10032654 pacid=23146277 polypeptide=Lus10032654 locus=Lus10032654.g ID=Lus10032654.BGIv1.0 annot-version=v1.0 MKKWRFEVAGNDDKEMIGKASSTTIRGVYNRIVDNLNKNDPRSVIQLGQGDPSVFSCFRPDSAVEAAVKESLESADYNGYAESRGILPARRAVAEYLNNG LPYKLTADDVFLTVGCTQAIEVAITALARPGANILLPRPGYPDYESFATQRLLQIRHYDLLPNKGWDIDLEAVEAIADENTVAIAVINPGNPCGNVFSYD RLLQVAEFARKLGILVIADEVYGHLAYGEKEFVPMGVFGSIVPVLTLGSLSKRWLVPGWRLGWLVTTDPNRILLHSGIVETIKDCVNISADPATVIQGAM PQMLKSSNGGFYVETNKLMKRVADLCYDKFQDMHGISCPRKAEGAMSIMIKLNLSEFEAIEDDMEFCLALSKEESVILIPGKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	0	1
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	5.2	0.9544
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	5.3	0.9632
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	6.2	0.9629
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	6.2	0.9316
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	7.5	0.9309
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	10.6	0.9379
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	10.7	0.9078
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	11.0	0.8770
					Lus10012132 [exp]	12.8	0.9134
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	13.2	0.9399

Compare expression of checked genes

Lus10032654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.