Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52870 478 / 4e-168 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 405 / 3e-139 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 78 / 6e-16 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 75 / 7e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G38870 70 / 7e-15 Serine protease inhibitor, potato inhibitor I-type family protein (.1) AT5G43140 72 / 4e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43570 58 / 2e-10 Serine protease inhibitor, potato inhibitor I-type family protein (.1) AT2G38900 53 / 4e-09 Serine protease inhibitor, potato inhibitor I-type family protein (.1.2) AT5G43580 54 / 6e-09 UPI UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) AT4G14305 55 / 1e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043097 [exp] 810 / 0 AT1G52870 505 / 2e-179 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10018568 [exp] 403 / 3e-138 AT4G03410 439 / 4e-155 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039800 [exp] 400 / 9e-137 AT4G03410 434 / 1e-152 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10002118 [exp] 77 / 2e-15 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 77 / 2e-15 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018783 [exp] 68 / 4e-14 AT2G38870 89 / 2e-25 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Lus10014740 [exp] 65 / 3e-13 AT2G38870 77 / 2e-20 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Lus10002732 [exp] 62 / 4e-12 AT2G38870 76 / 4e-20 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Lus10018786 [exp] 61 / 7e-12 AT2G38870 93 / 6e-27 Serine protease inhibitor, potato inhibitor I-type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123700 [exp] 532 / 0 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 521 / 0 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.019G103200 [exp] 391 / 4e-134 AT4G03410 413 / 2e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G110100 [exp] 78 / 8e-18 AT5G43580 78 / 1e-20 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.011G110400 [exp] 78 / 1e-17 AT5G43580 78 / 1e-20 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.005G221000 [exp] 74 / 1e-16 AT5G43580 74 / 5e-19 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.010G075600 [exp] 69 / 1e-14 AT5G43580 80 / 3e-21 UNUSUAL SERINE PROTEASE INHIBITOR, Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.009G090600 [exp] 73 / 2e-14 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G075200 [exp] 68 / 2e-14 AT2G38870 76 / 4e-20 Serine protease inhibitor, potato inhibitor I-type family protein (.1) Potri.016G078800 [exp] 67 / 5e-14 AT2G38870 79 / 3e-21 Serine protease inhibitor, potato inhibitor I-type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0367 [flax] [poplar] CI-2 PF00280 [flax] [poplar] potato_inhibit Potato inhibitor I family CL0367 [flax] [poplar] PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10032655 pacid=23146298 polypeptide=Lus10032655 locus=Lus10032655.g ID=Lus10032655.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCACGCCATTTCTCCTCCTCACAGCTTTCTCCCTCTTTCCAACCACAGAAAACCCATCTCAAAGAGCCTCTCAGGTTCTCAGATCCTGA CCAGCACCTGCCCGAAGCTCCCCCACAACTCGATTTCCCGGAGAAACAAGCATAAAAGTGACGGCGGCTGGGTGGTCAACTCGCTGCTCCAAGATGAGTT CGAAGTCATACCGGTGCAGAGCGAGGACCGTCAAGAAGGTATGGCGGCGAGTCAAGTGGAGAGAGAAGGCAACGAATCGACGACTCAGGTCAGCGGGTTC GGAGCTAGAGACGGCCAGTTGTCGTTGGAAGGTTTCTCCTCTGTTTCCGCCTCTGTAGTTGGAGGCGATGGCGGAGAAGGTAGTAATCAGAGGGAGAATG AGCTCGAAATGGACCGCCTGATTGATCGGACGATTAATGCGATGATTGTTCTTGCTGCTAGCAGCTATGCTATCACAAAGTTGCTCACCATCGACCATGA TTACTGGCATGGATGGACTCTTGTGGAGATACTGAGATATGCTCCTCAGCACAATTGGACTGCATATGAGGAGGCCCTGAAGACAAACCCAGTTTTGGCA AAAATGTGTATCAGCGGAGTGGTATATTCATTGGGAGATTGGATTGCACAGTGTTTTGAAGGTAAACCAATGTTCGAGTTCGATCGTGCGCGGATGCTCA GATCAGGCCTTGTTGGTTTTACGTTGCATGGGTCTCTTTCACACTATTATTACCAATTCTGCGAGGAGCTTTTCCCATTTCAAGACTGGTGGGTGGTTCC AGTCAAGGTGGCGTTTGACCAAACCGCCTGGTCTGCAGTTTGGAATAGCATCTATTTCACAGTGTTGGGATTCTTGAGACTGGAGTCTCCTTTGACTATT TTCGCTGAATTGAGGAGCACATTCTTCCCCATGCTTACAGCAGGCTGGAAGCTGTGGCCATTTGCGCATGTAATTACATATGGTATGATCCCCGTAGAAC AAAGGCTTCTCTGGGTTGATTGCGTGGAGCTCATTTGGGTGACAATACTCTCAACTTATTCGAACGAAAAATCGGAAGGCAGGATACTGGAGGCAGAGGC ACCCGTCGAAGCCGGTTCCAGCTCTAGTTCTGCATCGATCACGCTCCATGAGACAATCAGCTGGACTGCTTGTCAAGAAGAAGAAGAAGAAGAATACTCT TACAACATCACTCATCATGTCCATCCACTGCCGTGGTCAGCATATAGGAAGAGTGCGTGGCCGGAGCTAGTTGGGCGCGACGGAGAGGAGGCGGTGTCGA AAATAACGGCGGACAATCCAACGGTGAAGATCGCCAGGACGTTCAGTGAAGGAGCTATGGTGACGGGGGACTTCCGGTGCGATAGGGTTCGGGTGTATGT AGATAAGAATGGCACCGTCACTCGGGTCCCTCATATTGGTTAA
AA sequence Show only first row Show all	>Lus10032655 pacid=23146298 polypeptide=Lus10032655 locus=Lus10032655.g ID=Lus10032655.BGIv1.0 annot-version=v1.0 MASLHAISPPHSFLPLSNHRKPISKSLSGSQILTSTCPKLPHNSISRRNKHKSDGGWVVNSLLQDEFEVIPVQSEDRQEGMAASQVEREGNESTTQVSGF GARDGQLSLEGFSSVSASVVGGDGGEGSNQRENELEMDRLIDRTINAMIVLAASSYAITKLLTIDHDYWHGWTLVEILRYAPQHNWTAYEEALKTNPVLA KMCISGVVYSLGDWIAQCFEGKPMFEFDRARMLRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPVKVAFDQTAWSAVWNSIYFTVLGFLRLESPLTI FAELRSTFFPMLTAGWKLWPFAHVITYGMIPVEQRLLWVDCVELIWVTILSTYSNEKSEGRILEAEAPVEAGSSSSSASITLHETISWTACQEEEEEEYS YNITHHVHPLPWSAYRKSAWPELVGRDGEEAVSKITADNPTVKIARTFSEGAMVTGDFRCDRVRVYVDKNGTVTRVPHIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	0	1
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	1.0	0.9085
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	4.2	0.8087
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	7.5	0.7304
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	8.1	0.7664
AT4G13200			unknown protein		Lus10022803 [exp]	8.9	0.7665
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	9.6	0.7722
AT2G38695			unknown protein		Lus10022334 [exp]	11.5	0.7362
					Lus10040104 [exp]	17.1	0.7541
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	19.9	0.7315
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	20.2	0.7564

Compare expression of checked genes

Lus10032655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.