Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60600 398 / 2e-136 ABC4 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043094 [exp] 653 / 0 AT1G60600 396 / 8e-138 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050900 [exp] 473 / 1e-165 AT1G60600 441 / 2e-154 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2) Potri.001G311400 [exp] 52 / 1e-08 AT1G60600 48 / 1e-07 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10032658 pacid=23146308 polypeptide=Lus10032658 locus=Lus10032658.g ID=Lus10032658.BGIv1.0 annot-version=v1.0 ATGACGGCCGGCTGCAAGTTCGGCGTCGGAGTGAGGAGTGAGGACCGGCTGCAAGCTCGGCGTCGGTGGGAAGCTCGGCAGTGGCAGAGTGAGCCGGCGG CAGCTTCAATCACGACGTCGATTGTTGATGATGGTCCTTCTTCACCAGGATTCCACAATTTTGAGCATATGCACGGTCCTAAAGGTCTCAGCTTTGGGTT CGTTGCTAATGCGACTTTCACGCCTGCATTCAAGGAAGGAACCACTCTGTTTAGGGCGTACCTGGAGATTTCAGCTTCAAGTGCTTCCAGAACAACGCTA TATGGACGATGTAAAGGGGGAGAGGTTTTGTGTGGAACTAGTCATAAAGAGCTCAACTTTAAAATGAAAAAAAGATTCCATCGACGAGCCATTCCGGAGA GTAAACCAGGCTACGGTGGTAACGTGAAAGACGATGGAGATGTGACAAGGGGGACTTTGATATGGAGGGCAATCAAATTACCCATTTATTCTGTTGCTTT GATTCCTCTAACGGTTGGTGGTGCTGCTGCTTATTTGCAGACTGGCATATTTTCTGCAAAGCGCTATTTCAGTCTCTTGATTTCTTCAGTTCTAATCATA ACATGGCTTAATCTAAGCAACGATGTATATGATTTTGATACAGGAGCTGATAAGAATAAGAAAGAATCAGTTGTTAACTTAGTTGGAAGCCGTTCAGGAG TCTTTAATGCAGCTTGCTTTTGCCTCATCACTGGTTTCGCTGGTCTGACATGGACATCCTTGGGATCAAGAAGCATACGGGCAAATTTTTTATTGACTTG CGCGATCATTTGCGGTTACATATATCAGTGCCCACCTTTTCGGCTAAGTTACCATGGACTTGGTGAGCCCTTGTGCTTCGCAGCATTCGGTCCATTTGCC AGCACTGCTTTTTACTTATTGCTGCGAACCTCCAGTGAAGCACACAAGTTCCATTTAACGACGACGGTTCTTTCTGCCTCGTTTCTTATTGGATTCACAA CTACTTTAATCCTTTTCTGTAGTCACTTCCACCAGGTCGAAGAAGATGAAGCTGTTGGTAAAATATCACCTCTGGTTAGACTAGGGACGAAAAGAGGTTC AGTAATAGTTAAAGGCGCAATTGTGACACTGTACTCTCTCTTGGTTGCTTTTGGGATAAGTGGAACTCTACCATTTACATGCATTGTTCTCGGTGCCTTG ACGTTACCCATGGGGATTAAAGTGGTCAGATTCGTCGAGGAGAACCACATGATTGCTGCATCTTCTCTACAGGACAAGGGGAGAATCTTTATGGCGAAAT ATTACTGCGTGCGGCTCCATGCCTTGTTTGGGGCGGCACTAACAGCAGGACTAGTGTTGGCTAGGAATTTCGCAAAAGGATACGTAACGAGGAAGATAAT ATTGTCTTGA
AA sequence Show only first row Show all	>Lus10032658 pacid=23146308 polypeptide=Lus10032658 locus=Lus10032658.g ID=Lus10032658.BGIv1.0 annot-version=v1.0 MTAGCKFGVGVRSEDRLQARRRWEARQWQSEPAAASITTSIVDDGPSSPGFHNFEHMHGPKGLSFGFVANATFTPAFKEGTTLFRAYLEISASSASRTTL YGRCKGGEVLCGTSHKELNFKMKKRFHRRAIPESKPGYGGNVKDDGDVTRGTLIWRAIKLPIYSVALIPLTVGGAAAYLQTGIFSAKRYFSLLISSVLII TWLNLSNDVYDFDTGADKNKKESVVNLVGSRSGVFNAACFCLITGFAGLTWTSLGSRSIRANFLLTCAIICGYIYQCPPFRLSYHGLGEPLCFAAFGPFA STAFYLLLRTSSEAHKFHLTTTVLSASFLIGFTTTLILFCSHFHQVEEDEAVGKISPLVRLGTKRGSVIVKGAIVTLYSLLVAFGISGTLPFTCIVLGAL TLPMGIKVVRFVEENHMIAASSLQDKGRIFMAKYYCVRLHALFGAALTAGLVLARNFAKGYVTRKIILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	0	1
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	2.0	0.9299
AT1G14270			CAAX amino terminal protease f...		Lus10037179 [exp]	2.4	0.9224
AT2G17695			unknown protein		Lus10041839 [exp]	3.2	0.9235
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	6.0	0.9351
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	6.9	0.9002
AT1G64355			unknown protein		Lus10032371 [exp]	7.1	0.8845
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	8.9	0.8906
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10025637 [exp]	10.3	0.8621
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	12.5	0.9240
AT2G30695			unknown protein		Lus10004790 [exp]	12.8	0.9257

Compare expression of checked genes

Lus10032658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.