Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 301 / 8e-98 BGLU47 beta-glucosidase 47 (.1) AT1G61810 298 / 1e-96 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G61820 295 / 2e-95 BGLU46 beta glucosidase 46 (.1.3) AT1G02850 261 / 5e-83 BGLU11 beta glucosidase 11 (.1.2.3.4.5) AT1G26560 250 / 2e-78 BGLU40 beta glucosidase 40 (.1) AT4G27830 248 / 2e-77 BGLU10 beta glucosidase 10 (.1) AT2G25630 247 / 2e-77 BGLU14 beta glucosidase 14 (.1) AT1G60090 246 / 1e-76 BGLU4 beta glucosidase 4 (.1) AT5G44640 244 / 5e-76 BGLU13 beta glucosidase 13 (.1) AT1G60270 240 / 6e-76 BGLU6 beta glucosidase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032660 [exp] 505 / 9e-170 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10043093 [exp] 401 / 2e-139 AT4G21760 313 / 7e-103 beta-glucosidase 47 (.1) Lus10007656 [exp] 306 / 4e-100 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 305 / 2e-99 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 303 / 3e-98 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10026057 [exp] 248 / 3e-77 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10003915 [exp] 246 / 1e-76 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10007872 [exp] 244 / 5e-76 AT1G02850 621 / 0.0 beta glucosidase 11 (.1.2.3.4.5) Lus10031808 [exp] 244 / 5e-76 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403900 [exp] 393 / 9e-134 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.004G019300 [exp] 319 / 9e-105 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 310 / 2e-101 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 308 / 1e-100 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 307 / 2e-100 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019700 [exp] 306 / 4e-100 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G040700 [exp] 252 / 4e-79 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 244 / 3e-76 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G227200 [exp] 242 / 3e-75 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.015G041300 [exp] 236 / 5e-73 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10032659 pacid=23146315 polypeptide=Lus10032659 locus=Lus10032659.g ID=Lus10032659.BGIv1.0 annot-version=v1.0 ATGGCGCAGACAAGGAAGAAAGCAACCAGCCGTCAGCTAGTTCTGTTCCTCTGTTTTGTTTCTACTTGTTGCCTTGCAGAAGCAGATGAAGAAGTGAGAA GGTCACATTCCCCAAATGGATTTCTGTTTGGCACTACAACTTCGGCTAACCAGATTGAGGGAGCCTATCTTGAAGATGGAAAAGGTCTCAACAACTGGGA TGTTTTCTGTCACGTTCCTGGAAACATTAGGAAGTATGACAATGTTTACCATATGTTCTTGGAAGATATTGAATTGATGATTTCTCTAGGAGTGAACTCC TACAGATTCTCAATCTCCTGGACCAGAATTCTTCCCAGAGGGAGATTTGGTGACGTTAATCAAAAGGGCATCATGTTCTACAACCGAATTTTAGACCATC TTTTACTTGAGGGGATTGAACCATTTGTGACAATACATCACCATGATATCCCACAAGAACTTGAGGACGTATATGGGGGATGGCTCAGTCCTCTAATTCA GGAAGATTTCGTGCAGTTTGCGAGGATTTGTTTCGAAAGTTTTGGTAGTAAAGTCAAACATTGGGTGACTATCAACGAGCCAAACCTGTTTGTGGACATG GCCTATATTAGGGGAACTTACTCACCATCTCATTGTTCTCCACCTTTTGGAAACTGTTCATCTGGTACTTCTGAGTTGGAGCCTATCATTGCTATGCACA ACATGATACTGTCACATGCCAAAGCAGTCAAGATTTACCGCCAAGAGTTTCAGGAAAACCAAGGCGGTTCCATTGGGATAGTTCTCAATGCAATGTGGCT ACTAGATCCTTTGGTTTATGGAGATTATCCTTCTGAAATGCGATATGGGCCTCCACCGGATGAAGCTGTGCAACTGCAACAGATATTGGAGGATTCCAGC AGAATTGAATACCACAAGTCCTACCTTGCTGCTCTTGCCAGATCCATAAGGGATGGAGCTGATGTAAGAGGCTACTTTGTGTGGAGCTTGATGGACAACT TTGAGTGGGTTGATGGTTACACTCTTGGATATGGATTGTATTATGTGGATCGGCACACACTTGAGCGGATCCCCAAGAGATCTGTGATGTGGTACAAAGA TTTTCTGTCCAATTCTTCTGCTCAAAGTGTTGGGAGACTGCATGAAACTTCAATAACAAATGGAGTCGTTGATATGTAA
AA sequence Show only first row Show all	>Lus10032659 pacid=23146315 polypeptide=Lus10032659 locus=Lus10032659.g ID=Lus10032659.BGIv1.0 annot-version=v1.0 MAQTRKKATSRQLVLFLCFVSTCCLAEADEEVRRSHSPNGFLFGTTTSANQIEGAYLEDGKGLNNWDVFCHVPGNIRKYDNVYHMFLEDIELMISLGVNS YRFSISWTRILPRGRFGDVNQKGIMFYNRILDHLLLEGIEPFVTIHHHDIPQELEDVYGGWLSPLIQEDFVQFARICFESFGSKVKHWVTINEPNLFVDM AYIRGTYSPSHCSPPFGNCSSGTSELEPIIAMHNMILSHAKAVKIYRQEFQENQGGSIGIVLNAMWLLDPLVYGDYPSEMRYGPPPDEAVQLQQILEDSS RIEYHKSYLAALARSIRDGADVRGYFVWSLMDNFEWVDGYTLGYGLYYVDRHTLERIPKRSVMWYKDFLSNSSAQSVGRLHETSITNGVVDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	0	1
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	1.7	0.8804
					Lus10039070 [exp]	3.5	0.8566
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	5.2	0.8565
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	7.3	0.8368
AT5G11910			alpha/beta-Hydrolases superfam...		Lus10013517 [exp]	7.7	0.7857
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	10.2	0.8339
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	10.2	0.8298
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	10.4	0.8437
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	11.0	0.8256
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	11.1	0.7737

Compare expression of checked genes

Lus10032659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.