Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 526 / 3e-175 BGLU47 beta-glucosidase 47 (.1) AT1G61810 523 / 4e-174 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G61820 519 / 1e-172 BGLU46 beta glucosidase 46 (.1.3) AT1G26560 443 / 1e-143 BGLU40 beta glucosidase 40 (.1) AT2G44480 438 / 1e-141 BGLU17 beta glucosidase 17 (.1.2) AT5G44640 431 / 6e-139 BGLU13 beta glucosidase 13 (.1) AT2G44450 429 / 2e-138 BGLU15 beta glucosidase 15 (.1) AT5G42260 427 / 2e-137 BGLU12 beta glucosidase 12 (.1) AT3G18080 421 / 4e-135 BGLU44 B-S glucosidase 44 (.1) AT5G54570 421 / 1e-134 BGLU41 beta glucosidase 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043092 [exp] 941 / 0 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10043093 [exp] 590 / 0 AT4G21760 313 / 7e-103 beta-glucosidase 47 (.1) Lus10007656 [exp] 558 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 556 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 545 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10032659 [exp] 508 / 4e-170 AT4G21760 300 / 2e-97 beta-glucosidase 47 (.1) Lus10000225 [exp] 505 / 5e-170 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1) Lus10026057 [exp] 447 / 6e-145 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10024941 [exp] 442 / 5e-143 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403900 [exp] 760 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.004G019700 [exp] 557 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 556 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 553 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019300 [exp] 548 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 529 / 3e-176 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.011G122900 [exp] 548 / 3e-175 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.004G040700 [exp] 453 / 2e-147 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 440 / 1e-142 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 433 / 4e-140 AT1G26560 798 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10032660 pacid=23146437 polypeptide=Lus10032660 locus=Lus10032660.g ID=Lus10032660.BGIv1.0 annot-version=v1.0 ATGGCGGAGACAAGGAACAGAGCAGCGACCCATCACCTAGTTCTATTCCTCTGTTTTCTTTCGACTCGTTGCCTTGCAGAATCTGAAGATGAACAAGTGA GAAGGTCACATTTCCCAAATGGATTTCTATTCGGCGCTGCAACTTCTGCTTACCAGATTGAGGGAGCCTATCTTGAAGATGGAAAGGGTCTCAGCAACTG GGATGTTTTTTGTCACCTTCCTGGAAACATTAAGAAGAATGACAATGGCGATACTGCTGACAATCATTACCATCTGTTCTTGGAAGATATTGAATTGATT CTTGCCCTAGGAGTTAACTCCTATAGATTCTCAATCTCCTGGACCAGAATTCTTCCCAGAGGGAGATTTGGTGAAGTTAATCAAATGGGCATCCTGTTCT ACCACCGAATTCTAGACCATCTTTTACTTAAGGGGATTGAACCATTTGTGACAATACATCACCATGACATCCCACAAGAACTTGAGGACACATATGGGGG ATGGCTCAGTCCTCTAATTCAGGAAGATTTTGTGCAGTTTGCGAGGATTTGTTTCGAAAGTTTTGGTAGTAAAGTCAAACATTGGGTGACTATCAACGAG CCAAACCTGTTTGTGGACATGGCCTATATTAGGGGAACTTACCCACCATCTCATTGTTCTCCACCTTTTGGAAACTGTTCAGCTGGTAATTCTGAGTTGG AGCCTATCATTGCTATGCACAACATGATACTGTCACATGCCAAAGCAGTCAAGATTTACCGTCAAGAGTTTCAGGGAAGCCAAGGTGGTTCCATTGGGAT AGTTCTCTTTGCAATGTGGTATGAGCCCCTAAGAGAAAATGAAGTATTAGATCAGCAAGCTGTGAGTAGAGCACTGGCATTTGGTTCTCCTTGGCTACTA GATCCTTTGGTTTATGGAGACTATCCTTCTGAAATGCGTCAGTACCTCGGAGCTACACTTCCTAGTTTCACTGCCGAGCAAATGGGTTATGTTAAAGGGA GCATAGATTTCATTGGCTTAAACCATTATTCGGCACTGTATGCAAAAGATTGCCTCTATTCATCCTGTCCTCCGGGAGGTTCAGATCATGCCATCCGAGG CTATGTTTATACCACTGGGGAACGAGATGGGGTTACAATTGGTCCACCGACTGGAAATGTAAGGTTCTTTGTAGTTCCAAGTGGGATGGAGAATATTGTC AACTATCTGAAGAAAAGATACAACAATATGCCATTGTATGTCACTGAAAATGGATATGGGCCTCCACCGGATGAAGCTGAACAACTGCAGCAGATATTGG AGGATTCCAGCAGAATTGGATACCACAAGTCCTACATTGCTGCTCTTGCCAGATCCATAAGGGATGGAGCTGATGTAAGAGGCTACTTTGTGTGGAGCTT GATGGACAACTTTGAGTGGGTTGATGGTTACACTGTTAGATATGGCTTGTATTATGTGGACCGGCAGACACTTGACCGTATCCCCAAGAAATCTGCGATG TGGTATAAACATTTTCTGGCCAATTCTTCCGCTCAAACTGCTGGGCTTAGCTTGGTACCGGGGAGACTGCACGAAACTTTGATCAATAATGGAGTCGTAG ATACAATATTCGTGTCGACATGCACCCTTGAGGTCCAAGAAGGTGAGGTCCTAGCACTGCTTGAGGCCATGAATTGGATAGCTCGTAGCGGTTGCTTGGA TGTTGTTTTCGAAGTGGACTCAGTTGAGGTCGCAATGATTGTCGGGAGCAGCACCAGAAACGCCACGAAGAAACCAACAAACCCCAAAATGGATCCCCGA ACTCTCCTTGACCACGCTCTCTTCCAGCTCACTCCTACCAGAACCAGATGTGATCTTGTGGTTTTTGCTGCTTCTGGCGGCGCAAGTGAGAAATTAGCAT CTGGGCTTCTTCAGCCATTTGTATCTCACTTAAAAACTGCCAGCGATCAGATCTCCAAAGGCGGTTACTCCATCATTCTCCGTCCTTCTTCTTCACCCAA TACCTCCACTCCCTGGTTCACTAAAGCCACTCTCCAAAGATTTGTTAGGTTTGTCAGCACACCAGAAGTTCTCGAGAGATTTGTGACTATTGAAACTGAA CTTGAGCAGATTGAGAGTTCAGTTCACTCTCATGAGCTCTACAAATCGACTGTGTCATCTAAGGATGGGGTTGGTGATGCTGCATCCGAGGAAAGCTCGA AGGTTCACCTTCAGCGTGCTTTGGAATCTAGGAAAGCTATCCTACGCAAAGAGCAAGCAATGGCCTATGCTCGTGCATTGGTTACTGGATTCGAGCTGGA CTCTATTTATGATCTTATGTCTTTCGCTGATGCTTTTGGCGCTTCACGGTTAAGGGAAGCATGCATAAACTTTACGGAGTTATGCAAGAAGAAGAATCAA GATCGACTTTGGTTGGATGAAATCGTGGCAATGCAAGCTGCTCATCTGGAGTTGCCTTCTCTCAGAAACTCCGGGATTACACTTGCTGGTGATGAAACTT ATCCTAGTCAGTTACCCGCTTTGAGACTGAACGGCTCCATTGATGCCTCTGATTCGGCTACTAGTATCGGAAGCGTTGACCTAAGCCAAGATAGCAGTTT GCTGCCGCCATCAGTGCCATGGCCAAATCATGTACCTCCCTACATGCACAATTTTCAAGGTCCAGTCTATCCGCAGATGGCTCCATATCAAGGCTACGGT TACTTCCCCGGGAATATGCAATATGACCCCAACATTTCACGTCACTTGGACTCTGACGATCGCAGAAAAAGCAAGTCATCCTCTAGGAACCAGAAGAAGA ACCAAGATGACTCCACTGGCAGTGGTTCTAGTTCAGAGACCGACTCGGAGCAAAACAAGACGAATGATAGAACAGATGAGCATGTCCGCAGGAAAATACA TAGCAAGAAGTCTTCAGGAACAGTTGTGATTCGTAACATTAACTACATTGCTTCGAGGAGGGATGGAGAAAAGGGAAACACTTCCGGGGAGGAATCGGAG GAAGACGAGTTCATCAACAGAGAATCTCTGAAGCAGCAAGTGGAAGAGGCCGTTGGTTCTTTGGGGAGACAGAATAAGTCAGCTCCGCATCATCATAGGA AATCACAACGTGATAGCGACATGAACGTAAAGAATGAGGAAGAAGTTAATGGGAAGGATCAGTGGAGCTCTTTCCAGAGCCTTCTCATGAAGGAAGATGA TGCAGACACATATGACATTGCACCAAAATCTTTCCAAGTTGATGGAGAATCCCCGAAACAAAGGAAGCAGCAAATGGTGGCAAATGATTCCTTTGTTGCT ACAAGTAAGGACACCACAAGTGAACCCCAAACTCGAATCCAAAATTTTGAAGGTGACACTAATAGCCGCGTTGTGATGAAGAACAAGGATGAATGTTACG AGGATCTATTATTTCCCCGAAGACAGGAGGAAAAATCAGATGACCACTTGCTAGCCTCACTTTCTGGTTATTCTTCCGAGTCACAGATAATCAAAGTTCA GAAAGGAGGAGGAGACTAG
AA sequence Show only first row Show all	>Lus10032660 pacid=23146437 polypeptide=Lus10032660 locus=Lus10032660.g ID=Lus10032660.BGIv1.0 annot-version=v1.0 MAETRNRAATHHLVLFLCFLSTRCLAESEDEQVRRSHFPNGFLFGAATSAYQIEGAYLEDGKGLSNWDVFCHLPGNIKKNDNGDTADNHYHLFLEDIELI LALGVNSYRFSISWTRILPRGRFGEVNQMGILFYHRILDHLLLKGIEPFVTIHHHDIPQELEDTYGGWLSPLIQEDFVQFARICFESFGSKVKHWVTINE PNLFVDMAYIRGTYPPSHCSPPFGNCSAGNSELEPIIAMHNMILSHAKAVKIYRQEFQGSQGGSIGIVLFAMWYEPLRENEVLDQQAVSRALAFGSPWLL DPLVYGDYPSEMRQYLGATLPSFTAEQMGYVKGSIDFIGLNHYSALYAKDCLYSSCPPGGSDHAIRGYVYTTGERDGVTIGPPTGNVRFFVVPSGMENIV NYLKKRYNNMPLYVTENGYGPPPDEAEQLQQILEDSSRIGYHKSYIAALARSIRDGADVRGYFVWSLMDNFEWVDGYTVRYGLYYVDRQTLDRIPKKSAM WYKHFLANSSAQTAGLSLVPGRLHETLINNGVVDTIFVSTCTLEVQEGEVLALLEAMNWIARSGCLDVVFEVDSVEVAMIVGSSTRNATKKPTNPKMDPR TLLDHALFQLTPTRTRCDLVVFAASGGASEKLASGLLQPFVSHLKTASDQISKGGYSIILRPSSSPNTSTPWFTKATLQRFVRFVSTPEVLERFVTIETE LEQIESSVHSHELYKSTVSSKDGVGDAASEESSKVHLQRALESRKAILRKEQAMAYARALVTGFELDSIYDLMSFADAFGASRLREACINFTELCKKKNQ DRLWLDEIVAMQAAHLELPSLRNSGITLAGDETYPSQLPALRLNGSIDASDSATSIGSVDLSQDSSLLPPSVPWPNHVPPYMHNFQGPVYPQMAPYQGYG YFPGNMQYDPNISRHLDSDDRRKSKSSSRNQKKNQDDSTGSGSSSETDSEQNKTNDRTDEHVRRKIHSKKSSGTVVIRNINYIASRRDGEKGNTSGEESE EDEFINRESLKQQVEEAVGSLGRQNKSAPHHHRKSQRDSDMNVKNEEEVNGKDQWSSFQSLLMKEDDADTYDIAPKSFQVDGESPKQRKQQMVANDSFVA TSKDTTSEPQTRIQNFEGDTNSRVVMKNKDECYEDLLFPRRQEEKSDDHLLASLSGYSSESQIIKVQKGGGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	0	1
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	1.7	0.8296
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	2.4	0.8054
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	3.5	0.8131
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	4.9	0.8073
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	5.0	0.8059
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	5.5	0.8196
AT5G40450			unknown protein		Lus10001136 [exp]	5.5	0.7879
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	7.9	0.7900
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	8.5	0.7787
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	10.1	0.7494

Compare expression of checked genes

Lus10032660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.