Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27430 120 / 8e-29 CIP7 COP1-interacting protein 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043092 [exp] 753 / 0 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10011217 [exp] 45 / 9e-05 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403700 [exp] 272 / 2e-81 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G122900 [exp] 268 / 5e-80 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.011G046900 [exp] 82 / 3e-16 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 64 / 1e-10 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032661 pacid=23146223 polypeptide=Lus10032661 locus=Lus10032661.g ID=Lus10032661.BGIv1.0 annot-version=v1.0 ATGGACAAATCGGTTTACAAGAATGGCAGCGAGGACATCAACCTGTTTGATATCGAACATCCATGCGTTGTGGAAAACAAAAAGGTCGATGTTCTTGCTG ATGATTCATTCATGATTCAGGATCGATCGTTCGAAGATGATGGCTCTCGTTCCATATTAAGAACTGACATAAGCATGGTCGCGGATGTAGCTGAATTTTC TCAATGTGGAAATGGTGGTCCAGATTCTACACAAGAAAAAGTCAAAGCAGTTGGTTCCTATGAACCAGATGACCTTTATATGGTACTTGGGCGTGATCCG GAAGCTGAGAAAGCCGTCCCTTCTTGGACACCGGAGATGGATTATGAAAATGACATTTTATCTGCTGAGATCAACAGAAAGGGTTCAACTTTGGAAAAAA CTGCTGTGGAGACTAATTCAGGCAAAGAAGTTAACAAGGTGAAAGCTTCTGGTGGAAATCTTGGAAGAAGCAAATTGGGCATTGCCTCGAAAACCAGGAA GCCTTCCCTTGGAAGTAGAACAACTCTTCCCAAGATGAAATCCGAGAGGGAAGAAGAGAGTAGGAAAAAAGCAGAGGCATTAAAGCTCGAACGTCAGAAA AGAATTGCAGCGAGGAGTTCTGCGGGGAATAGTCCACTGACATCAAGGATAAACTCGACTTCTAATGATGGGAAGTCCAAGAAGACGGTTTTTAGAAGTT CCACCATTGATCGCCTTGCTACTGCTAGGACAACAGCAAAGGTGGAATCAGCTCAATCGAAACAGTACGAACCGAAAAGTGCAACATCCAAAGCAAATGG TCTGAAACAGAAGGCTGTTTCTGGTGGTAATAAGAAGCCAAGAGCAAAATCTGATGTCACAGAGAAGAAGAAGAAGATTGCTCCAGTTGGCATAGGACAT AAATCAACAGAATTACTTGGCATGCAAGAAACTACAGTGACTAGTGAAACTGTTGACATGAAGGACAATAAGGAGTTACCAAAATTGTCAGTGGCGAAGA ATGTAGTTACTGAGGTTGGAAAGGCTTCCTATGATCTGGTGGAGGATATTTCTGGGGTGATGATACATCCTACGGAAGGATCACCGGATAAACAGAAGAA CGTATCTGATGATGCTAAAGAAGAAGAAGAGAACGATGAGGTGAGAATCGAACATTCAGCTTTGCCACAAAGATCCCAGATGGAAATTTCCAGTACACCC CCACCACCTGACATTGTAAACCCAGAACAGATTCACACAAGAAAGAAATGGAACAGTGGCGAAACCTCTCCGAAAGGTTCGAAAGGGCTTCGAAGGCTCC TTTTTTTCGGAAAGAGAACTTGA
AA sequence Show only first row Show all	>Lus10032661 pacid=23146223 polypeptide=Lus10032661 locus=Lus10032661.g ID=Lus10032661.BGIv1.0 annot-version=v1.0 MDKSVYKNGSEDINLFDIEHPCVVENKKVDVLADDSFMIQDRSFEDDGSRSILRTDISMVADVAEFSQCGNGGPDSTQEKVKAVGSYEPDDLYMVLGRDP EAEKAVPSWTPEMDYENDILSAEINRKGSTLEKTAVETNSGKEVNKVKASGGNLGRSKLGIASKTRKPSLGSRTTLPKMKSEREEESRKKAEALKLERQK RIAARSSAGNSPLTSRINSTSNDGKSKKTVFRSSTIDRLATARTTAKVESAQSKQYEPKSATSKANGLKQKAVSGGNKKPRAKSDVTEKKKKIAPVGIGH KSTELLGMQETTVTSETVDMKDNKELPKLSVAKNVVTEVGKASYDLVEDISGVMIHPTEGSPDKQKNVSDDAKEEEENDEVRIEHSALPQRSQMEISSTP PPPDIVNPEQIHTRKKWNSGETSPKGSKGLRRLLFFGKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61100			disease resistance protein (TI...		Lus10032661 [exp]	0	1
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	2.4	0.9696
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	4.9	0.9608
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	6.7	0.9574
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	7.0	0.9448
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	9.2	0.9480
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	9.7	0.9338
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	11.8	0.9561
AT5G42710			unknown protein		Lus10010807 [exp]	14.1	0.9435
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	14.7	0.9507
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	18.4	0.9419

Compare expression of checked genes

Lus10032661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.