Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52910 230 / 7e-78 Protein of unknown function (DUF1218) (.1) AT3G15480 229 / 1e-77 Protein of unknown function (DUF1218) (.1) AT4G27435 223 / 5e-75 Protein of unknown function (DUF1218) (.1) AT1G61065 191 / 1e-62 Protein of unknown function (DUF1218) (.1) AT1G13380 127 / 3e-37 Protein of unknown function (DUF1218) (.1) AT1G68220 111 / 7e-31 Protein of unknown function (DUF1218) (.1) AT5G17210 61 / 2e-11 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043091 [exp] 357 / 5e-128 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 171 / 2e-54 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10043484 [exp] 146 / 2e-44 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 144 / 4e-41 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10034324 [exp] 132 / 6e-39 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 130 / 2e-38 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10011208 [exp] 129 / 3e-38 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1) Lus10032663 [exp] 91 / 5e-23 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403600 [exp] 258 / 1e-88 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 252 / 2e-86 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 158 / 2e-49 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 147 / 6e-45 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 144 / 8e-44 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 133 / 2e-39 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 130 / 2e-38 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 111 / 8e-31 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 57 / 6e-10 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10032662 pacid=23146420 polypeptide=Lus10032662 locus=Lus10032662.g ID=Lus10032662.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAGCTCGTATTGATCACTGTCTTCATCTTCGATCTCATTGCCTTTGGCCTCGCTGTAGGTGCTGAGCAGAGACGAACCACTGCTACGATCC AAGCAGATACAGAGAAGGACTACAACTACTGTGTATATGACTCGGACATCTCAACCGGTTTCGGTGTTGGAGCATTCTTGTTCCTTTTGGCTAGCCAAGT CATTATCATGGCAGCAAGCCGATGCTTCTGCTGCGGCAGGGCCATGAGTCCTAGTGGCTCCAGAGCTTGTGCCGTCATGCTCTTCATGATCTGCTGGCTG TTCTTTCTGGTTGCCGAGGCGTGCTTGCTGGCGGGTTCGGTGAGGAATGCATATCACACCAAGTACAGGAACAACAGGGCTATATTCGGTGCGGACCCTC CTACTTGCCAGACTTTGAGGAAGGGAGTGTTTGCAGCTGGAGCAGCGTTCACTCTCTTTACAGCCATCGTCTCCCAGTTCTACTATGTCTCCTACTCCAA GGCGAGAGATGGCTCCCAGCAGCCCTACGGTAGAGAAACTGGAGTTGGGATGGGAACCTACAAATGA
AA sequence Show only first row Show all	>Lus10032662 pacid=23146420 polypeptide=Lus10032662 locus=Lus10032662.g ID=Lus10032662.BGIv1.0 annot-version=v1.0 MASKLVLITVFIFDLIAFGLAVGAEQRRTTATIQADTEKDYNYCVYDSDISTGFGVGAFLFLLASQVIIMAASRCFCCGRAMSPSGSRACAVMLFMICWL FFLVAEACLLAGSVRNAYHTKYRNNRAIFGADPPTCQTLRKGVFAAGAAFTLFTAIVSQFYYVSYSKARDGSQQPYGRETGVGMGTYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	0	1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10024987 [exp]	2.4	0.9703
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	2.4	0.9770
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	6.0	0.9623
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	6.5	0.9570
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	7.2	0.9706
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10031650 [exp]	7.2	0.9543
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	9.4	0.9555
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	9.5	0.9607
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	10.2	0.9676
AT5G61340			unknown protein		Lus10034727 [exp]	12.0	0.9655

Compare expression of checked genes

Lus10032662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.