Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27435 99 / 2e-26 Protein of unknown function (DUF1218) (.1) AT3G15480 82 / 7e-20 Protein of unknown function (DUF1218) (.1) AT1G52910 82 / 8e-20 Protein of unknown function (DUF1218) (.1) AT1G61065 77 / 1e-17 Protein of unknown function (DUF1218) (.1) AT1G13380 71 / 3e-15 Protein of unknown function (DUF1218) (.1) AT1G68220 69 / 1e-14 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043484 [exp] 98 / 2e-25 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10032662 [exp] 96 / 5e-25 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 96 / 7e-25 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 96 / 3e-23 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10018474 [exp] 65 / 3e-13 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 63 / 2e-12 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 63 / 3e-12 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10011208 [exp] 59 / 3e-11 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403600 [exp] 104 / 1e-28 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 100 / 8e-27 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 97 / 2e-25 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 97 / 4e-25 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 89 / 3e-22 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 63 / 1e-12 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 61 / 9e-12 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 60 / 2e-11 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10032663 pacid=23146225 polypeptide=Lus10032663 locus=Lus10032663.g ID=Lus10032663.BGIv1.0 annot-version=v1.0 ATGACGACGACTGCCTCCACGGTGCTGTTCACGGCGGTGTTCTCTCTTGATTTCATTTCCTTTCTGCTTGCTCTTGCCGCCGAGCAGACCCGAACTACCG CTAGGCTTGTCCCGGACATGGACTATAACTACATCTACTGCGTCTACGACTCCGACATCGCAACTATCTTGGGTGGTTTCGCCGCAGGTTTGTTCTTCTT CAGTCAATTACTCGATTACTTCCTAACCCGAAAGCCTTCCAGCAAGCATCGCGGGGCTTCGAGTATTCCTCTCGCCATCTGCTTGATCTCATTCCTGGGT GCAGAGGCTTGTTTGGTGGTGGGATCAGTGAAGAACGCGCACCGAAACAAATACAGGATGATATTAGGGTTCGGGGATCTTGATTGCGGGACACTAGGAG CAGGGGTTTTCGAGGCCGGAGCAATTTTGGTTATGATATGTAGCTTTGTTTCCAAAATGAACCACGGCTGGTCGGAGACCAAGGAGGAGGAGTTCCAGAC TGAACGGCTGCTGGTCGGAGACCAAGGAGGAGTTACGAAATGA
AA sequence Show only first row Show all	>Lus10032663 pacid=23146225 polypeptide=Lus10032663 locus=Lus10032663.g ID=Lus10032663.BGIv1.0 annot-version=v1.0 MTTTASTVLFTAVFSLDFISFLLALAAEQTRTTARLVPDMDYNYIYCVYDSDIATILGGFAAGLFFFSQLLDYFLTRKPSSKHRGASSIPLAICLISFLG AEACLVVGSVKNAHRNKYRMILGFGDLDCGTLGAGVFEAGAILVMICSFVSKMNHGWSETKEEEFQTERLLVGDQGGVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27435			Protein of unknown function (D...		Lus10032663 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	10.6	0.9009
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	11.0	0.8960
					Lus10019212 [exp]	12.7	0.8617
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	13.2	0.8958
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	19.9	0.8956
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001781 [exp]	24.5	0.8774
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10002589 [exp]	27.2	0.8659
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	28.3	0.8685
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	33.0	0.8810
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	34.6	0.8837

Compare expression of checked genes

Lus10032663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.