Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79030 744 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 733 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT5G49580 330 / 6e-105 Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 59 / 3e-09 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G49060 56 / 5e-08 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT5G18140 54 / 1e-07 Chaperone DnaJ-domain superfamily protein (.1) AT3G62600 53 / 2e-07 ATERDJ3B DNAJ heat shock family protein (.1) AT2G25560 53 / 6e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G16650 48 / 1e-06 Chaperone DnaJ-domain superfamily protein (.1) AT1G77020 50 / 2e-06 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043089 [exp] 442 / 5e-153 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10017085 [exp] 338 / 1e-107 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10037801 [exp] 293 / 2e-88 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10017472 [exp] 60 / 2e-09 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 60 / 2e-09 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10037502 [exp] 56 / 5e-08 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10028842 [exp] 56 / 7e-08 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10032100 [exp] 55 / 8e-08 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10017980 [exp] 55 / 9e-08 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438300 [exp] 882 / 0 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G142000 [exp] 822 / 0 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G148900 [exp] 338 / 1e-107 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101800 [exp] 196 / 4e-57 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G158300 [exp] 56 / 3e-08 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.009G138100 [exp] 52 / 3e-07 AT5G23590 255 / 2e-84 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.009G119800 [exp] 52 / 7e-07 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.002G105500 [exp] 52 / 7e-07 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 51 / 9e-07 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.005G156100 [exp] 51 / 1e-06 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10032666 pacid=23146412 polypeptide=Lus10032666 locus=Lus10032666.g ID=Lus10032666.BGIv1.0 annot-version=v1.0 ATGGAGGACATCGGGCTGTTTAAGCAAGGTTGGAAATGGCTGCAAATGCAGAAGCACACCTGCGCAAGGATCAGGACTGTTGTTGGATGTGTTAGAGACA AAGCTGGTGTGTTTATAGACCGCCATTGGCCAATGGTTTGCGGCGGGTTAGCCAGATTTGGGAAGTTCGCTGCTTTGGTGTTGATCTATTGGAAAGACTG CTCTTTCAGGGGTTTCCTATCTGTTGTCCAACTGGGTTCCGCTGCTTTGCTTCTTATTATGTGGAGCTGCTTTCTTAGTCTCACTTCAATGTCATGCTTG ATCTATGTGCTGCTCAGTATGGGTGCTGCAGGAGCGGCTGTCCAATACTTGGGGTATACTCCAGGGCTGTTTATAGTAGGTCTATGTGCTATATTAACTT TGTGGATGTATGCCAACTTTTGGATAACGGGAACATTGTTTATAATCGGAGGTTATTTGTTTTCTCTCAATCATGCTCGGTTGGTGGTCCTGATGGCTGC AATATATGCTATGTATTTGGTTCAAGTTCGTGTAGGATGGCATGGTGTTTTTGTTTCAATACACCTCACATTTTTCTCAAACGATATATTGAATCTATTG CTAAAATGGTGTGATAATATCAGCGAGACTGTGCATGTGGATGAGCAGAAGGATTCTGAAACGGTTCGAGAGGATAAGTTCTCTCCAGCTTGTGAACGCT CGGTTCCAACTGATGCATCTGAAAATGTGCAGTCATGTAAATCTTCGAGTAAGCCAGTTTGTACTGCCTCTGTTGCTAGTAATGAACCAGAATGTTCTGC TAGGAAGGTAGTTATTGAAGAAACGAGTTCAGTTGATGAGATGAGAAGGATTTTGAATAGTGAAAATCATTATGATGCACTCGGGTTTCCTCGGCATAAG AGGATTGATGCTGCAATTTTGAAAAAGGAGTACCGAAAGAAGGCCATGCTTGTGCATCCTGATAAAAACATGGGGAGCTCGTTAGCAAGTGAATCATTTA AGAAACTTCAGTGTGCCTATGAGGTTCTCTCTGATGGCACTAAGAAGCGGGATTATGATGAGCAATTACGGAAGGAAGAGCTGACCACTAAAAGTGTGTG TCAGAAGTCTAGTAATACCTCAAGACAGGATTCTCCGGACTATTTCTCTGAGGAATCGAGGCGCATCCAGTGTACCAAGTGTGGTAATTCACATATATGG GTCTGCACAAATAGGAGTAAGGCCAAGGCGAGATGGTGTCAGGATTGTTGCCAATACCATCAAGCCAAAGATGGTGATGGATGGGTTGAATACAAGGGTT CATTGGGTTTTGATAGACCTGAAAAGGTCGAAATCCCCCGCGCTTTCGTATGCGCCGAAAGCAAAATATTTGATGTGTCTGAGTGGGCTATTTGTCAGGG AATGGCGTGCAGACCCAACACACATCGGCCAAGTTTCCACGTGAATATGGTCGGTTTGGAGAAGACACAGCGGACGAATTCAGGACGATATCCGTGGGAT TTAGATGCGGAGATGATGGATGAAGATGAAGAAGAATTTGAGCTGTGGCTTCAAGAAGCACTAGCATCGGGACTGTTCTGCGAAACTTCTAAACGAAGGA AAAGCTGGAGTCCTTTCAAGTTGAATCCAAAGAAAGGGAAGAAACAATGGCGGAGAACTTCAACCTGA
AA sequence Show only first row Show all	>Lus10032666 pacid=23146412 polypeptide=Lus10032666 locus=Lus10032666.g ID=Lus10032666.BGIv1.0 annot-version=v1.0 MEDIGLFKQGWKWLQMQKHTCARIRTVVGCVRDKAGVFIDRHWPMVCGGLARFGKFAALVLIYWKDCSFRGFLSVVQLGSAALLLIMWSCFLSLTSMSCL IYVLLSMGAAGAAVQYLGYTPGLFIVGLCAILTLWMYANFWITGTLFIIGGYLFSLNHARLVVLMAAIYAMYLVQVRVGWHGVFVSIHLTFFSNDILNLL LKWCDNISETVHVDEQKDSETVREDKFSPACERSVPTDASENVQSCKSSSKPVCTASVASNEPECSARKVVIEETSSVDEMRRILNSENHYDALGFPRHK RIDAAILKKEYRKKAMLVHPDKNMGSSLASESFKKLQCAYEVLSDGTKKRDYDEQLRKEELTTKSVCQKSSNTSRQDSPDYFSEESRRIQCTKCGNSHIW VCTNRSKAKARWCQDCCQYHQAKDGDGWVEYKGSLGFDRPEKVEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKTQRTNSGRYPWD LDAEMMDEDEEEFELWLQEALASGLFCETSKRRKSWSPFKLNPKKGKKQWRRTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	2.0	0.8420
					Lus10025229 [exp]	4.9	0.8102
AT3G27390			unknown protein		Lus10014881 [exp]	10.9	0.7791
AT1G18490			Protein of unknown function (D...		Lus10027254 [exp]	15.2	0.7232
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	16.2	0.8077
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	17.0	0.7759
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	18.8	0.7904
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	20.2	0.7638
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	22.1	0.8006
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	23.2	0.7822

Compare expression of checked genes

Lus10032666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.