Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15410 360 / 3e-121 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G17440 74 / 2e-14 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT4G26050 68 / 2e-12 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT4G35470 62 / 2e-10 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT4G08850 62 / 2e-10 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G80080 59 / 2e-09 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT2G19330 57 / 4e-09 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT3G47570 54 / 8e-08 Leucine-rich repeat protein kinase family protein (.1) AT1G27180 53 / 1e-07 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G26500 53 / 1e-07 PIRL2 plant intracellular ras group-related LRR 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043086 [exp] 419 / 1e-146 AT3G15410 497 / 2e-173 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10003229 [exp] 64 / 4e-11 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10021973 [exp] 60 / 1e-09 AT2G34930 313 / 2e-95 disease resistance family protein / LRR family protein (.1) Lus10035976 [exp] 59 / 1e-09 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10021635 [exp] 57 / 5e-09 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10014236 [exp] 57 / 1e-08 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10016684 [exp] 57 / 1e-08 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10023323 [exp] 54 / 9e-08 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10000681 [exp] 53 / 9e-08 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121700 [exp] 385 / 7e-131 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.018G139700 [exp] 71 / 2e-13 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 67 / 3e-12 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.007G065000 [exp] 67 / 6e-12 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 64 / 5e-11 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 61 / 3e-10 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.015G048800 [exp] 57 / 2e-09 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.011G104600 [exp] 58 / 4e-09 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.015G083800 [exp] 57 / 8e-09 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.003G090100 [exp] 57 / 9e-09 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10032667 pacid=23146275 polypeptide=Lus10032667 locus=Lus10032667.g ID=Lus10032667.BGIv1.0 annot-version=v1.0 ATGTATGACCTTCTAACCAACCTCTTGACACATGACAAGAAGCTAATCACATGTAAACTTGATGATGAGTTTATCTGTTGTGCAGGGACGATGACAAGTC TTCGGAAAATTTTGCTTAATGGCAATCCAATACGAACAATTAGAAGCTCTTTGGTTTCTGGACCCACTGCTGCTTTATTGAAATTTTTACGTAGTAGACT CCCTCAAGATGGAGGTTCAGAATCAAGTACTTCAGCAAAGGAGGAAATAGTTGCCACTGCAGCGAGGCTATCTCTTGGTTCAAAGGATCTTTCCTTGGAA GGGTTGGGTTTGAGTGATGTTCCATCAAAGGCATGGGAATCTGGTGAAATTATTAAACTTGATCTTTCTAGGAATGCCATTGAAGAGCTTCCTGTCGAAC TTTCCACGTGTGCCTCTATACAGACTTTGATCCTGTCGAAAAACAAGATTAAAGTGTGGCCAGGCTCAGTCTTGAAGTCGCTCCCAAACCTGGCATGCTT GAAGTTGGATAACAATAGACTTGAACAGATTCCTGCTGATGCCTTTCAAGCTGTGCCGATGCTTCAAATTCTAGACCTAAGCTGTAATCCATCATCCTTA TCCAGAAACCCAGCATTTTCCAGCTTACAACATTTGCACGAGCTTTATCTAAGGCGTGTTCAATTGCGGGAAATTCCATCTGACATCTTAAACTTAAAGC AATTGAAGATCCTATACTTGAGTCAAAATTCAATTGAATCTATCCCAGTGGAATTCAAACATTTCGTTCACCTCACTGAGTTTGATGTATCTGACAACAA TATTTCAGTGCTCCCTCCAGAATTGGGCTTACTGGAGCCAACGTTGCAGGTGTTGAGGCTTGATGGGAATCCATTGAGAAGCATCCGGAGGCCAATTCTA GAGAGAGGAACGAAAGCAGTTCTTCAGTATCTGAAGGACAAACTTCCGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10032667 pacid=23146275 polypeptide=Lus10032667 locus=Lus10032667.g ID=Lus10032667.BGIv1.0 annot-version=v1.0 MYDLLTNLLTHDKKLITCKLDDEFICCAGTMTSLRKILLNGNPIRTIRSSLVSGPTAALLKFLRSRLPQDGGSESSTSAKEEIVATAARLSLGSKDLSLE GLGLSDVPSKAWESGEIIKLDLSRNAIEELPVELSTCASIQTLILSKNKIKVWPGSVLKSLPNLACLKLDNNRLEQIPADAFQAVPMLQILDLSCNPSSL SRNPAFSSLQHLHELYLRRVQLREIPSDILNLKQLKILYLSQNSIESIPVEFKHFVHLTEFDVSDNNISVLPPELGLLEPTLQVLRLDGNPLRSIRRPIL ERGTKAVLQYLKDKLPEQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	3.5	0.8353
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	4.0	0.8262
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10029687 [exp]	9.6	0.7466
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	10.1	0.8038
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	10.8	0.8031
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	11.0	0.7811
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	15.3	0.7954
AT5G01010			unknown protein		Lus10029706 [exp]	15.5	0.8003
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	16.9	0.8016
AT1G63610			unknown protein		Lus10013233 [exp]	16.9	0.7305

Compare expression of checked genes

Lus10032667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.