Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15410 242 / 6e-77 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G35470 96 / 1e-22 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 86 / 4e-19 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G11330 82 / 4e-18 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT3G26500 78 / 2e-16 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT3G11010 78 / 2e-16 AtRLP34 receptor like protein 34 (.1) AT4G26050 77 / 3e-16 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 77 / 3e-16 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT5G05850 77 / 4e-16 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT1G12970 76 / 1e-15 PIRL3 plant intracellular ras group-related LRR 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043086 [exp] 141 / 8e-40 AT3G15410 497 / 2e-173 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10035976 [exp] 103 / 3e-25 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 100 / 8e-24 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 94 / 3e-22 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10021635 [exp] 81 / 4e-18 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10013689 [exp] 78 / 2e-16 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 77 / 4e-16 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10023677 [exp] 76 / 7e-16 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000681 [exp] 74 / 9e-16 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121700 [exp] 268 / 6e-87 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G098600 [exp] 98 / 2e-23 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 93 / 1e-21 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.007G065000 [exp] 93 / 1e-21 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 84 / 1e-18 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.015G083800 [exp] 84 / 2e-18 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 82 / 4e-18 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.015G048800 [exp] 76 / 2e-16 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.011G139700 [exp] 76 / 7e-16 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G049100 [exp] 76 / 1e-15 AT1G28440 1387 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10032668 pacid=23146259 polypeptide=Lus10032668 locus=Lus10032668.g ID=Lus10032668.BGIv1.0 annot-version=v1.0 ATGGATCGAGCACTCAAAGCTGCTAGAGCTTCTGGTTCTCTCAACCTCTCCAATCGCTCTCTAAGGCAAGTTCCCCAAACCCTGACTAGTTCCGGTTCAT TATTTTGTTCCGTCTGCGATGACCGATCGCTTCCTAATCCCATTTGGATTCCAGAGATGTTTTTGGCTCATAACAACATAGAGTCATTGAAGGAAGATCT GAGAAACTTGAGTCAATTGACTGTGCTTAATGTTAGCAACAACAAGCTCCACGAGCTCCCCTCTGCTATTGGAGAGCTTCCTATGCTTAAGTCTTTAGAT CTGTCATTTAACTTGATTATCAAAATACCCGAAGAAATTGGATCGGCAACTTCTCTTGTCAAGTTGGATTGTTCAAGCAATAGGCTCTCTGAACTTCCTG CTTCACTTGGAAGATGCGTGGATCTGTCTGATCTCAAGGCATCGAAGAATTGTATCAGTAGCTTGCCAGACGAGCTAGCCAATTGTTCAAAACTGACAAA ATTAGATGTGGAGGGTAACAAGCTCAGGAATTTGTCTGGCAATATGGTGGCATCATGGACCAAGCTTACAGAACTTAATGCAGCAAAGAACTTGCTGAGT GGTCTACCAGACAATTTAGGAAATTTGTCAAAGCTCATCCGCCTGGACCTTCATCAAAACAGTGAGTGA
AA sequence Show only first row Show all	>Lus10032668 pacid=23146259 polypeptide=Lus10032668 locus=Lus10032668.g ID=Lus10032668.BGIv1.0 annot-version=v1.0 MDRALKAARASGSLNLSNRSLRQVPQTLTSSGSLFCSVCDDRSLPNPIWIPEMFLAHNNIESLKEDLRNLSQLTVLNVSNNKLHELPSAIGELPMLKSLD LSFNLIIKIPEEIGSATSLVKLDCSSNRLSELPASLGRCVDLSDLKASKNCISSLPDELANCSKLTKLDVEGNKLRNLSGNMVASWTKLTELNAAKNLLS GLPDNLGNLSKLIRLDLHQNSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032668 [exp]	0	1
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	6.3	0.8360
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	7.7	0.8501
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	9.9	0.8104
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	11.7	0.8046
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	15.9	0.7812
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	16.3	0.7951
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	16.4	0.7604
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	17.5	0.7894
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	18.4	0.7577
AT1G14740			Protein of unknown function (D...		Lus10030771 [exp]	24.1	0.6877

Compare expression of checked genes

Lus10032668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.