Plant FIBer expression Database

Lus10032670 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10032670 pacid=23146318 polypeptide=Lus10032670 locus=Lus10032670.g ID=Lus10032670.BGIv1.0 annot-version=v1.0
ATGAAGGGCTCAATTTCAACAGCGATGATTAATGCTCCCTTCTCCATCTTTCTACTCATCATGATGATCTCCACAGCTTCATCACACAGGCTCCTCAGGG
TATCCACCATTACTGGGGACGGCATTATTAAACACGATACTACTACTACTGTCGGATCATCAGCTGACCACACTCAACAATTGGTTGGCAGTGGCATCGG
CTATGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGCTCTGGCTCTGGCTTCGGTTCTGGGATAGGATATGGCTCCGGTGAAGGTGGTGGTGGCAATGGA
TTCGGATTTGGAAGAGGGAGTGGGAGTGGGAGTGGGAGCGGAGTAGGGATGGGATATGGTGTTGGAGGTGGCCTTGGATATGGGCTTAGTGGTGGATGGC
CTAGGGGTTTTGGCTACGGACTAGGCATTGGTTCCGGCGCCTCTCCTACTCCCTTAATTCCTTTCCCTCCTCTGAACAATGGTGCCGGTTCCGGTGGAGC
TGGTAGTGGCAACGGAGAAGGAAGTGGCAGTGGTGGAGGATATGGCCAAGGAAGCGGCAGCAATGCTGGTGGAGGTAGTGGCCAAGGAAGCGGTAACGGT
GGAGGATCCGGCAGCGGTGGAAGTGGTAACGGTGGTGGCAGCGGTGGCGGTAGTGGCGAAGGAAGCGGTAACGGTAGTGGAAGTGGAAACGGTGGAGGTA
GCGGTAGTGGGGAAGGAAGCGGCAAGGGTGGTGGAAGTGGAAACGGTGGAGATTATGGTAGCGGTAACGGTGGAGAATACGGTGGTGGCAGTGGAAGTGG
CAGTGGAGAAGGAAGCGGTAACGGTGGAGGATCAGGCGGCGGTGGTGGGGAAGGAAGTGGCAGCGGCAGTGGCGGTGGAGGAAGTGGTAATGGGGGGGCA
GGGGGGGGCGGCGGCGGCGGAAGTGGTTCTGGAGGGGACGGCGGCGGTGGATGGATTACCCCACCGAATCCGACGTGTCCTCCAGGTGGCAATTGTGGGT
TGGTAATACCACCAAGTCCAACACCGCCAGGTAACGGCCAATATGGAGGATGTATGTGCACCCCAGAATGCTTCCCGCCACACACCAACCATTGGATCAA
ATCCAGCATTAACCACTGA
AA sequence
>Lus10032670 pacid=23146318 polypeptide=Lus10032670 locus=Lus10032670.g ID=Lus10032670.BGIv1.0 annot-version=v1.0
MKGSISTAMINAPFSIFLLIMMISTASSHRLLRVSTITGDGIIKHDTTTTVGSSADHTQQLVGSGIGYGSGSGSGSGSGSGSGFGSGIGYGSGEGGGGNG
FGFGRGSGSGSGSGVGMGYGVGGGLGYGLSGGWPRGFGYGLGIGSGASPTPLIPFPPLNNGAGSGGAGSGNGEGSGSGGGYGQGSGSNAGGGSGQGSGNG
GGSGSGGSGNGGGSGGGSGEGSGNGSGSGNGGGSGSGEGSGKGGGSGNGGDYGSGNGGEYGGGSGSGSGEGSGNGGGSGGGGGEGSGSGSGGGGSGNGGA
GGGGGGGSGSGGDGGGGWITPPNPTCPPGGNCGLVIPPSPTPPGNGQYGGCMCTPECFPPHTNHWIKSSINH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032670
[exp]
0 1
AT3G14880 unknown protein Lus10013711
[exp]
5.7 0.9748
AT1G75750 GASA1 GAST1 protein homolog 1 (.1.2) Lus10034524
[exp]
8.0 0.9737
Lus10038463
[exp]
9.9 0.9735
AT4G03220 Protein with RNI-like/FBD-like... Lus10023567
[exp]
11.3 0.9733
AT1G04645 Plant self-incompatibility pro... Lus10002219
[exp]
12.6 0.9733
AT2G18180 Sec14p-like phosphatidylinosit... Lus10028332
[exp]
13.6 0.9299
Lus10009618
[exp]
13.9 0.9733
AT5G59810 ATSBT5.4 Subtilase family protein (.1) Lus10039085
[exp]
15.0 0.9733
Lus10005830
[exp]
16.0 0.9733
AT1G75790 SKS18 SKU5 similar 18 (.1) Lus10013556
[exp]
17.0 0.9733

Lus10032670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.