Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54590 598 / 0 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 350 / 1e-117 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G19300 237 / 2e-71 Protein kinase superfamily protein (.1) AT5G48740 239 / 2e-70 Leucine-rich repeat protein kinase family protein (.1) AT1G52290 229 / 1e-69 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT2G23200 235 / 2e-69 Protein kinase superfamily protein (.1) AT1G49730 233 / 2e-69 Protein kinase superfamily protein (.1.2.3.4) AT1G67720 235 / 7e-69 Leucine-rich repeat protein kinase family protein (.1) AT5G15080 226 / 7e-69 Protein kinase superfamily protein (.1) AT4G39110 232 / 3e-68 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043083 [exp] 768 / 0 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 382 / 4e-130 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 381 / 7e-130 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 247 / 8e-75 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 246 / 2e-74 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10038174 [exp] 243 / 3e-74 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 244 / 2e-72 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 243 / 5e-72 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024020 [exp] 234 / 6e-71 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415300 [exp] 637 / 0 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G131200 [exp] 618 / 0 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 398 / 1e-136 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 395 / 3e-134 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 249 / 8e-76 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 244 / 9e-74 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.019G094200 [exp] 232 / 4e-71 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.004G153600 [exp] 235 / 2e-70 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.019G094600 [exp] 238 / 4e-70 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 237 / 8e-70 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10032672 pacid=23146262 polypeptide=Lus10032672 locus=Lus10032672.g ID=Lus10032672.BGIv1.0 annot-version=v1.0 ATGAAAGGGGAATCATCTGGATTGATTATTGGGATATCAATAGGAGTGGTGATTGGTGTGCTCTTGGCTATTCTAGCATTCTTTGGGTTTCGGTACCACA GGAAAAGATCCCAGATTGGTAACAGCAGTTCTAGGAGAGCAGCCACGATTCCAATCAGAGAAAATGGTGGTGATGCTAGTACAGCCATGTCTGATTCCAC CCTTGGTCCGGATTCACCGGTGAAATCATCAGCGCCGCCAAGTGGGATGTCGTTTTGGCTCGAAACGTTCAAGAGGAACAATGTTGTGTCACTTTCTGGA TTGCCTGAGTACTCTTACAAGGATCTCCAAAAGGCAACAGGTAACTTTACAACAGTGATTGGGCAAGGAGCATTTGGTTCTGTTTATAAAGCTCAGATGC CTACTGGGGAGACTGTTGCTGTTAAAGTGCTTGCTACCGATTCTAAACAAGGGGAGAAAGAGTTTCATACTGAGGTTATGCTTCTGGGAAGGTTGCATCA CAGGAACCTAGTGAATTTGGTCGGGTACTGTTCAGAGAAAGGGAGACACATACTGATATATGTATACATGAGCAAAGGCAGCTTAGCTTCTCATTTGTAC AGCGAAAATCTCGAACCATTGAATTGGGATGTGAGAGTAAACATAGTTCTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGACGGGGCAGTTCCACCAG TGATTCACCGCGACATTAAATCATCCAACATTCTGCTGGATCGTTCAATGAAAGCCAGGGTGGCTGACTTTGGACTTTCAAGAGAAGAAATGGTGGATAG ACATGCTGCCAACTTAAGGGGAACGTTTGGATACCTCGATCCTGAGTATATATCTACGAGGATTTTCACGAAGAAGAGCGATGTGTACAGCTATGGAGTG TTGCTTTTCGAACTCATAGCTTGCAGAAACCCTCAGCAAGGTCTGATGGAATATGTTGAGCTAGCAGCGATGAACACCGAAGGGAAAGCAGGGTGGGAGG AAATGGTGGACTCGCGTCTTGAAGGAAGGTTCGACGTGAACGAGCTGAACAAAGTAGCAGCTCTTGCATACAAATGCGTAAACCGGGTTCCAAAGAAACG GCCTTCGATGAGGGACATTGTGCAGGTGTTGTCGAGGATGCTCAAGTTGCGGCACAGCAGAAAGCATCGACTCAAGAAGCTCATGTCTGGGTTGGCCGAG GAAGTTTCCATCGATATTGAGATGCCGAGACTCAAAGCTGCTGCTGAACGCCACCACGAGCGGGAAGAGTCGATCGACAGCACGGAGACTTGTGAAGTGA CTTAG
AA sequence Show only first row Show all	>Lus10032672 pacid=23146262 polypeptide=Lus10032672 locus=Lus10032672.g ID=Lus10032672.BGIv1.0 annot-version=v1.0 MKGESSGLIIGISIGVVIGVLLAILAFFGFRYHRKRSQIGNSSSRRAATIPIRENGGDASTAMSDSTLGPDSPVKSSAPPSGMSFWLETFKRNNVVSLSG LPEYSYKDLQKATGNFTTVIGQGAFGSVYKAQMPTGETVAVKVLATDSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCSEKGRHILIYVYMSKGSLASHLY SENLEPLNWDVRVNIVLDVARGLEYLHDGAVPPVIHRDIKSSNILLDRSMKARVADFGLSREEMVDRHAANLRGTFGYLDPEYISTRIFTKKSDVYSYGV LLFELIACRNPQQGLMEYVELAAMNTEGKAGWEEMVDSRLEGRFDVNELNKVAALAYKCVNRVPKKRPSMRDIVQVLSRMLKLRHSRKHRLKKLMSGLAE EVSIDIEMPRLKAAAERHHEREESIDSTETCEVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10032672 [exp]	0	1
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	3.6	0.8646
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	4.2	0.8576
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	10.7	0.8325
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	11.5	0.8271
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	14.0	0.8071
					Lus10033476 [exp]	15.5	0.8279
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	16.0	0.8045
					Lus10011047 [exp]	17.5	0.8536
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10013541 [exp]	19.2	0.7956
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	19.9	0.7964

Compare expression of checked genes

Lus10032672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.