Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33340 232 / 1e-73 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 73 / 5e-14 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 71 / 4e-13 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 69 / 8e-13 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 67 / 5e-12 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 67 / 6e-12 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 66 / 1e-11 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 63 / 1e-10 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G14910 62 / 2e-10 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 56 / 1e-08 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008557 [exp] 506 / 0 AT1G33340 314 / 4e-105 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 67 / 7e-12 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 62 / 2e-10 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 62 / 2e-10 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 61 / 4e-10 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 61 / 6e-10 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 61 / 8e-10 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 58 / 6e-09 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 57 / 8e-09 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063700 [exp] 307 / 4e-103 AT1G33340 397 / 1e-137 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 71 / 2e-13 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 71 / 3e-13 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 69 / 1e-12 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 67 / 6e-12 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 66 / 2e-11 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 62 / 1e-10 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 59 / 1e-09 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 56 / 2e-08 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 54 / 7e-08 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10032674 pacid=23158993 polypeptide=Lus10032674 locus=Lus10032674.g ID=Lus10032674.BGIv1.0 annot-version=v1.0 ATGATGGGAGCTGATCTACAGGGCCGGCTCCGGCTAGCTCTCTGTACGGTCAAGGATCATGCATCCATAGGCAAGGCCATTATTCATATGACCCATCACG ATGCCAAAAAGGGATTCCCTTACCTCCAAATCGCTCTTGTCCGTGCTACCGGCCACCACTATATCTCCAACATCGACGACAAACACATGCGCGAAATCCT CTTCTTGGCCAACTCCCCTGGCTCCATCCCTTTCCTAGCCGAATGTATCTCTCGCCGCCTCTCCAAGACTAGAGACCGTTTGGTGGCCTCGAAGACGCTC CTCTTGCTCCACAGGCTCCTCCGCGGAGGAAACCGGTGCTTCGAGCTCCACCTCCGTAGGGCCCACGCATCCGGCCACCTCCAAATCGCCACTAATTGGT TCTCCTCGCAACAACAGATTAATAATTCCTCATCCTCCCCCGACGCTTCTCTTCGCTTCCTCCACAATTATTCCGCTTATCTCCAGGAGAGGATCACGTG GGTAATCAATCAATCGGGAAAGCTCGAGCCGCCTTCTTCGTCCATCACAACGACAAACGAAGGCCGTCTCGAATTCGGGCCCCACCACATGGTGTTTCGC AAGCTGCCCAAATGTCAAGCGCTTATAGACAGGGTGCTTGATTGTTTCCCCTTCGCTAATTCCTCGCCTACCTTCGACACGCTCTACGGAGCCACCATGA CTAACATTTTGAAGGAGAGCTTCCAAGTGTACACAACATATAGTGAATGCGTGATGGCTCTAATGAACATGTTTTTCGATCTAACCGTAGATGCTAGGGC TCTTGCATGCCAGATCCTAAGGAGGGCTTCGCGACAAACCCAACTCCTCCACCTAATGAGAGCCTGGAGTACCCTTTGGCCGAAATCATTAATACCGAGC ATGTCATGGCGTTGGGGCAACTCCAGCTCTGCACAGATGTCGTTCGTCCCACCTCCGATTCGAATGGATATCAGTCTCGAGCCCTCACCATTACGAGCAT AG
AA sequence Show only first row Show all	>Lus10032674 pacid=23158993 polypeptide=Lus10032674 locus=Lus10032674.g ID=Lus10032674.BGIv1.0 annot-version=v1.0 MMGADLQGRLRLALCTVKDHASIGKAIIHMTHHDAKKGFPYLQIALVRATGHHYISNIDDKHMREILFLANSPGSIPFLAECISRRLSKTRDRLVASKTL LLLHRLLRGGNRCFELHLRRAHASGHLQIATNWFSSQQQINNSSSSPDASLRFLHNYSAYLQERITWVINQSGKLEPPSSSITTTNEGRLEFGPHHMVFR KLPKCQALIDRVLDCFPFANSSPTFDTLYGATMTNILKESFQVYTTYSECVMALMNMFFDLTVDARALACQILRRASRQTQLLHLMRAWSTLWPKSLIPS MSWRWGNSSSAQMSFVPPPIRMDISLEPSPLRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	4.6	0.8602
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	4.9	0.7860
AT4G08250	GRAS		GRAS family transcription fact...		Lus10033517 [exp]	5.4	0.7739
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	6.5	0.8087
					Lus10027667 [exp]	6.5	0.8602
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	7.7	0.8151
					Lus10015682 [exp]	7.9	0.8602
AT4G18340			Glycosyl hydrolase superfamily...		Lus10031034 [exp]	9.2	0.8602
AT2G14378			Protein of unknown function (D...		Lus10019101 [exp]	10.2	0.8602
					Lus10011769 [exp]	10.5	0.6891

Compare expression of checked genes

Lus10032674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.