Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33330 116 / 1e-32 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008558 [exp] 153 / 2e-46 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063800 [exp] 115 / 3e-32 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032675 pacid=23159021 polypeptide=Lus10032675 locus=Lus10032675.g ID=Lus10032675.BGIv1.0 annot-version=v1.0 ATGTCCACCTACAAGTCTTCCGGGCCCGGAACAAGCGCCGGAACAAGCGCGAGTCGGCTGTCCGTCTCAAACACTTGCCTACTGGCCGCTGAGGATCGAT CGCAGCACAAGAATCGTGCTTCTGCTTTGAAGCGTCTACGCACGCTTTTAGCTCTCAGAGTGAGAAACCCCGTGGAACTTGATGGATATTCTCCTCCGCC AGAGCTTCTTCAGATACTTCCTCCCAAGTCCACCATTAGAACCTCTGATTCTGGTTCTCAAATTGGCCCCAACAATCCTAAATTCGCTTTGGGAATGCAA GCTCTCATAGACCTAATCTCTGCTGTTGATGGTTCTGTATCTGAAGCTGCAAAGCTTTTGGGGTTAAGCACTGGTGGATTATCACGATTAATACTATCAG ATGACTCTCTTCGTATGGCTGTGAACGAGTTGAGGAATTCAAAGGTGTCAACATACCAGTTATTGGCACAATTGTGA
AA sequence Show only first row Show all	>Lus10032675 pacid=23159021 polypeptide=Lus10032675 locus=Lus10032675.g ID=Lus10032675.BGIv1.0 annot-version=v1.0 MSTYKSSGPGTSAGTSASRLSVSNTCLLAAEDRSQHKNRASALKRLRTLLALRVRNPVELDGYSPPPELLQILPPKSTIRTSDSGSQIGPNNPKFALGMQ ALIDLISAVDGSVSEAAKLLGLSTGGLSRLILSDDSLRMAVNELRNSKVSTYQLLAQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33330			Class I peptide chain release ...		Lus10032675 [exp]	0	1
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	14.9	0.7915
AT1G03910			unknown protein		Lus10030000 [exp]	17.0	0.7537
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	19.6	0.7892
					Lus10022623 [exp]	20.3	0.7302
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	21.6	0.7533
AT3G08030			Protein of unknown function, D...		Lus10019727 [exp]	29.7	0.7824
AT5G20960		AT-AO1, AOalpha...	ARABIDOPSIS THALIANA ALDEHYDE ...		Lus10011279 [exp]	32.0	0.7828
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10005401 [exp]	32.6	0.7668
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	38.2	0.7725
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	48.3	0.7003

Compare expression of checked genes

Lus10032675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.