Plant FIBer expression Database

Lus10032679 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G56850 133 / 9e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008560
[exp]
696 / 0 AT5G56850 123 / 2e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G151100
[exp]
175 / 3e-48 AT5G56850 154 / 6e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10032679 pacid=23159011 polypeptide=Lus10032679 locus=Lus10032679.g ID=Lus10032679.BGIv1.0 annot-version=v1.0
ATGCCGGGAACCATCCATGTTTCAGTGCTGGCTATCATAGGTGTTCAATCCTTGACGCCTTCTTCTCAGATACGCGTCAAAGTTTCCATTGGGAAGAGGG
AACATCAAACTTGGAACAAAGGCGACTTCTCTTTCCCATTAACAACTCTCCGAGACAATGTGATTGTGACACTGGAGGATACAGATGGCAATGAAATCTC
CCATACAAAAGGAATTGATATGAGGTTGCTGATTGGGAAAGGCATTTGGGATGACATTTTCCCTCTGGATGGAGATGGAGGTGGCCATGTACATTTGAAG
CTCCAGTTTTTCCTCAGCGAAGATGATCGTCAAAGAATCAGAATCATGAGAGAATCTGCACTGAAAAAGAAACATGATGAACTTCTCAGCAGCAGAAGCA
CCAGTATGGTGCACAAGGTCGAAAAAAGATGTCAAGACACTTCATCCAACCGTGTAAAAGAAGTGAAAAAAGAGAGAACGGTAGTCTTCTCAAATGATGG
CTCCTCCCTTGGAACCATTTCAAAGGGCCAAAACCCATTGGAGAAAGCTCATGGCACTGTGAGGAACATGATAAGTGCCTTTGAAAGTAGCGGCCATCAG
GACATGAGGAGAAAAGTAATAAGACAAAAAATAACAAAGTCTCAGTCAGTCAACAACTTAGTCAATGTTGACACCTCAAAATCCAAGATGATGCAGAAAG
TTGGATCAACAGACTCCCTGTCGGGACAGCTCAGCAGTTGTCTACCTCAGCCTGATGACATCCATATTAAAGAAGACAAAACAGTAAATCAGGACGTGGA
AAGTATAGTAAGACCAGAAATGAGCAAGTCTCAGTCGGGCTTAAGCCTAATATCCAAAATGCAGAATGTTACTGGAGCTAACGAGACCGAAAAAATGAAG
TTTCTTGAGGATTTGGATAGAAGGAAGCGTGCAAGTGAGAGGGCTTCTTTTTCAGGAAATATCCATGGTCAGCAAACCAGTGGTGATGTGATCACTAGAA
AGAGTGACAGTACAATTGGAAGACGAGAAATTTACAGTTCAGGAGATGATCATCAATCGCCAGAGTGTTCTGGCGCATGGATATTTTCTGATCAAGGTAG
GCGCTTGTGTGTAACAACTGCTGGAAAACACATGCTCAACTTAATCGGTGGGTTCTGTTGCGAAAGTGAAAGGATATCAGGTCCAAGAAACATGGAAAAT
AGAATAGAGAATTTTGTTGATGGTGACGTTGCAAAAGAGAGTGGAGAAGACGGAGAGAAATCGGTAGCCGAGGGGTCAAGTTCAAGAGATGTTGAAACTC
CAAGAGGACCTATTGGGCAGGTGATGAGAGTTGCAATGATGGCTGGTTTTGCAGCTCTTGTTGTCTTTACTAGACAAAGAAACCAATAG
AA sequence
>Lus10032679 pacid=23159011 polypeptide=Lus10032679 locus=Lus10032679.g ID=Lus10032679.BGIv1.0 annot-version=v1.0
MPGTIHVSVLAIIGVQSLTPSSQIRVKVSIGKREHQTWNKGDFSFPLTTLRDNVIVTLEDTDGNEISHTKGIDMRLLIGKGIWDDIFPLDGDGGGHVHLK
LQFFLSEDDRQRIRIMRESALKKKHDELLSSRSTSMVHKVEKRCQDTSSNRVKEVKKERTVVFSNDGSSLGTISKGQNPLEKAHGTVRNMISAFESSGHQ
DMRRKVIRQKITKSQSVNNLVNVDTSKSKMMQKVGSTDSLSGQLSSCLPQPDDIHIKEDKTVNQDVESIVRPEMSKSQSGLSLISKMQNVTGANETEKMK
FLEDLDRRKRASERASFSGNIHGQQTSGDVITRKSDSTIGRREIYSSGDDHQSPECSGAWIFSDQGRRLCVTTAGKHMLNLIGGFCCESERISGPRNMEN
RIENFVDGDVAKESGEDGEKSVAEGSSSRDVETPRGPIGQVMRVAMMAGFAALVVFTRQRNQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G56850 unknown protein Lus10032679
[exp]
0 1
AT2G47240 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1... Lus10002414
[exp]
1.4 0.9191
AT2G25737 Sulfite exporter TauE/SafE fam... Lus10011683
[exp]
4.5 0.8886
AT5G41050 Pollen Ole e 1 allergen and ex... Lus10032018
[exp]
4.9 0.8968
AT1G76990 ACR3 ACT domain repeat 3 (.1.2.3.4.... Lus10028646
[exp]
6.0 0.8587
AT1G07080 Thioredoxin superfamily protei... Lus10012503
[exp]
6.5 0.9206
AT5G41050 Pollen Ole e 1 allergen and ex... Lus10035187
[exp]
7.5 0.8955
AT5G56850 unknown protein Lus10008560
[exp]
7.5 0.9106
AT1G04620 HCAR 7-hydroxymethyl chlorophyll a ... Lus10043145
[exp]
9.2 0.9124
AT5G43270 SBP SPL2 squamosa promoter binding prot... Lus10021614
[exp]
11.3 0.8934
AT3G14980 Acyl-CoA N-acyltransferase wit... Lus10026374
[exp]
15.2 0.8402

Lus10032679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.