Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19560 637 / 0 ESSP1, AtTHP1, EER5 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008561 [exp] 767 / 0 AT2G19560 681 / 0.0 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221700 [exp] 693 / 0 AT2G19560 663 / 0.0 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10032680 pacid=23159024 polypeptide=Lus10032680 locus=Lus10032680.g ID=Lus10032680.BGIv1.0 annot-version=v1.0 ATGGCTTACCTGAGCATGGGAGAATCGCACAGAAGAATCACTGACTATCTTAACAGGTTTTCCGACGCCATCTCCTACCAGGACGGAGATACTCTGGCAC AGCTGTTCTCCGTCTCCTCCAACTCCCCCTCTCTCCTCTCCCTCGCCGACGCTCTCAACGTTTTCCAGGATGCTAATAGACTGATAAAGCAATCGGACAA ATTCTCGCAATTTGGGGAAGTAGTGGCTCCATTTTTCCGTGCTCTTCAAAGCTATAGAATCGGGAATTTGGTTGATGCCTTCCAAGCATTCGAGAAATCT GCCAATGCCTTTATACAGGAGTTCCGGAACTGGGAATCGGCTTGGGCTTTGGAGACACTTTATGTCATTGCTTATGAGATAAGGGTTCTTGCAGAGCGGG CCGATAGAGAGCTCGCTTCGAATGGAAAATCTCCAGAGAAGTTGAAGGGAGCTGGTTCATTCCTCATGAAAGTGTTTGGTGTTCTTGCTGGGAAAGGTCC GAAGCGTGTAGGAGCGCTATATGTAACTTGTCAGTTGTTCAAAGTATACTTTAAGCTTGGCACAGTTCACCTTTGCCGTAGTGTGATAAGAAGTATAGAA ACTGCCAGAATATTTGATTTTGAGGAGTTTCCAACTAGGGACAAGGTCACTTACATGTACTACACTGGCCGTTTAGAAGTTCTCAATGAAAATTTCCCAG CTGCTGATCAAAAGTTGTCCTATGCCTTGACACACTGCAGTCTCAGCAAAGAAGCAAATATAAGGATGATATTGAAGTATTTGATACCAGTGAAGCTTTC AATAGGCATTTTACCAAAGAGGCAGCTCCTAGAGAACTATAACTTGGTCGAGTACAGTAATGTTGTTGAAGCCCTCAAGCGAGGTGATCTAAGACTTCTT CGAAGTGCTCTTCAAGAGAATGAAGATCAATTCCTCAGATCAGGTGTTTATCTTGTCCTGGAGAAGCTAGAACTTCAAGTTTATCAAAGATTACTAAAGA AGATCTACATTATCCAGAAGCAAAAGGACCAAAGCAAAGGTCACCAACTGAAGTTGGAGGTGATTGTTAAAGCATTAAAATGGCTCGAGATTGCAATGGA CATTGACGAGGTGGAATGCATAGTGGCAATATTGATATACAAGAACTTAATGAAGGGTTACTTTGCCCACAAGAGCAAGGTTGTAGTGTTGAGCAAGCAA GATCCTTTCCCTAAATTAGACGGCAATCCGGTTGGTTAA
AA sequence Show only first row Show all	>Lus10032680 pacid=23159024 polypeptide=Lus10032680 locus=Lus10032680.g ID=Lus10032680.BGIv1.0 annot-version=v1.0 MAYLSMGESHRRITDYLNRFSDAISYQDGDTLAQLFSVSSNSPSLLSLADALNVFQDANRLIKQSDKFSQFGEVVAPFFRALQSYRIGNLVDAFQAFEKS ANAFIQEFRNWESAWALETLYVIAYEIRVLAERADRELASNGKSPEKLKGAGSFLMKVFGVLAGKGPKRVGALYVTCQLFKVYFKLGTVHLCRSVIRSIE TARIFDFEEFPTRDKVTYMYYTGRLEVLNENFPAADQKLSYALTHCSLSKEANIRMILKYLIPVKLSIGILPKRQLLENYNLVEYSNVVEALKRGDLRLL RSALQENEDQFLRSGVYLVLEKLELQVYQRLLKKIYIIQKQKDQSKGHQLKLEVIVKALKWLEIAMDIDEVECIVAILIYKNLMKGYFAHKSKVVVLSKQ DPFPKLDGNPVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	0	1
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	3.2	0.7717
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	4.0	0.8305
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	6.0	0.7790
					Lus10008178 [exp]	8.9	0.7395
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	10.4	0.7822
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	10.6	0.7231
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	12.6	0.7145
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	16.0	0.7814
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	16.4	0.7650
AT5G10320			unknown protein		Lus10000634 [exp]	19.8	0.7674

Compare expression of checked genes

Lus10032680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.