Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29680 688 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29690 550 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29700 525 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29710 180 / 7e-55 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008562 [exp] 914 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10034660 [exp] 577 / 0 AT4G29680 558 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10007981 [exp] 534 / 0 AT4G29680 526 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10017872 [exp] 251 / 1e-81 AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1) Lus10000041 [exp] 213 / 4e-67 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150900 [exp] 706 / 0 AT4G29680 703 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.018G066600 [exp] 696 / 0 AT4G29680 678 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10032681 pacid=23158989 polypeptide=Lus10032681 locus=Lus10032681.g ID=Lus10032681.BGIv1.0 annot-version=v1.0 ATGGGTACTGAATCGGCTTTAACCGCAACAAAGCCGACTCCTATTCCAACTCATGAAGAAGACCCTCCATCAAACCAATCCGCCTCTCTCCTCGCCGCCG ATGAATCATCCTCTCCGCCTCAGAAGCCCACCACCACCATCATCTTCATCGCTCTCCTCTTAGTCACTTGCGTCGCTCTCTCCGCAGCCTCCGCCTTCGC TTTCCTCTTCTTCTCCGCCAAATCCATCTCTCCGATTTCCCACGACGTCAAGACGGCGCGTCCTCTAACGAAATTGGAACGCCCGGTCGTTTTGGTCATC TCCTCCGACGGGTTCCGGTTCGGGTACCAGCACAAAACCCTGACTCCCAACATAGCCCGACTCATCGCCAATGGCACGGAGGCCGAGACCGGTTTGATTC CTGTATTCCCTACTCTAACCTTCCCGAATCATTATTCAATTGTCACAGGGCTTTACCCTGCTTACCATGGAATCATTAACAACAAGTTTACTGATCCTAG AACTGGAGATGTTTTTACCATGGCCAGCCACGATCCTAGATGGTGGCTGGGCGAGCCGATGTGGGAGACTCTGGCTAATCATGGTTTGAAAGCCGCTACT TACTTCTGGCCTGGATCTGAGGTGATCAAGGGGTCTTGGAACTGCCCTAAAGGGTTTTGTATGCAGTATGACGGATCGGTTCCATTTGAGGATAGGGTTG ATACAATATTGAGTTACTTTGATCTGCCTAGCAGTGAGATTCCTGTGTTTATGACGCTGTATTTTGAGGATCCTGATCATCAAGGTCACCAAGTTGGTCC AGATGATCCTCAGATTACCGAAGCGGTTGCTCACATTGACAGTTTGATAGGGAGGTTGATTGATGGATTGGAGAAGAGAGGGGTTTTCGAAGATGTTACT GTTATCATGTTGGGTGATCATGGCATGGTTGGCACTTGTGATAAGAAACTTATCATCCTTGATGATTTAGCCGAATGGGTTGAGATTCCGAAAGAATGGG TGCCTTACTACACTCCGGTGCTTTCGATTCGACCGCCGAATGATGTGAATCTCTCTGACGTTGTTGCGAAGATGAACCAAGGATTGGAGTCCGGGAAAGT TGAGAACGGGAAGTACCTGAAAATGTATCTTAAGGAGGATCTGCCTGGTAGGCTGCATTACTCGGAGAGCGAGAGGATTCCTCCAATTATCGGGATGCTC GGGGAGGGTTATAAGGTGGAGCAGAAGAGAACGAAGAATGGGCAAGAGTGCGGGGGAGCTCATGGCTATGACAATGCGTATTTCTCGATGAGGACCATCT TCGTCGGCCATGGTCCTCAGTTTGGGAAAGGAGTGAAAGTGCCGTCGTTTGAGAATATACAGATATACAATGTGATTGCCTCGATTTTGAATGTGGAGGG TGCCCCGAATAACGGGTCTTCGTCGTTTCCTCAGTCGATTCTTTTGCGGAAGCCATAG
AA sequence Show only first row Show all	>Lus10032681 pacid=23158989 polypeptide=Lus10032681 locus=Lus10032681.g ID=Lus10032681.BGIv1.0 annot-version=v1.0 MGTESALTATKPTPIPTHEEDPPSNQSASLLAADESSSPPQKPTTTIIFIALLLVTCVALSAASAFAFLFFSAKSISPISHDVKTARPLTKLERPVVLVI SSDGFRFGYQHKTLTPNIARLIANGTEAETGLIPVFPTLTFPNHYSIVTGLYPAYHGIINNKFTDPRTGDVFTMASHDPRWWLGEPMWETLANHGLKAAT YFWPGSEVIKGSWNCPKGFCMQYDGSVPFEDRVDTILSYFDLPSSEIPVFMTLYFEDPDHQGHQVGPDDPQITEAVAHIDSLIGRLIDGLEKRGVFEDVT VIMLGDHGMVGTCDKKLIILDDLAEWVEIPKEWVPYYTPVLSIRPPNDVNLSDVVAKMNQGLESGKVENGKYLKMYLKEDLPGRLHYSESERIPPIIGML GEGYKVEQKRTKNGQECGGAHGYDNAYFSMRTIFVGHGPQFGKGVKVPSFENIQIYNVIASILNVEGAPNNGSSSFPQSILLRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	0	1
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	1.4	0.9388
AT1G66080			unknown protein		Lus10010967 [exp]	3.2	0.9303
AT1G65720			unknown protein		Lus10031363 [exp]	4.5	0.9303
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	4.7	0.9124
AT5G67020			unknown protein		Lus10019344 [exp]	4.7	0.9364
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	4.9	0.9352
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	6.3	0.9142
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	6.7	0.9165
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	6.9	0.9080
AT5G39570			unknown protein		Lus10016220 [exp]	7.3	0.9226

Compare expression of checked genes

Lus10032681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.