Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19590 223 / 9e-73 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G12010 162 / 2e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G05010 159 / 2e-47 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT1G62380 158 / 5e-47 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G77330 131 / 7e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 97 / 2e-23 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 96 / 5e-23 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 96 / 5e-23 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 91 / 5e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 84 / 6e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008564 [exp] 342 / 6e-119 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10015153 [exp] 169 / 2e-51 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10031530 [exp] 168 / 7e-51 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10035334 [exp] 167 / 1e-50 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10029992 [exp] 165 / 1e-49 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10000857 [exp] 132 / 7e-37 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 130 / 2e-36 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 99 / 3e-24 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 98 / 8e-24 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151600 [exp] 245 / 3e-81 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.004G003000 [exp] 169 / 3e-51 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 166 / 2e-50 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.014G159000 [exp] 164 / 3e-49 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 162 / 7e-49 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.005G182700 [exp] 137 / 3e-39 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 137 / 4e-39 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 107 / 2e-27 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 106 / 5e-27 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 103 / 8e-26 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032683 pacid=23158976 polypeptide=Lus10032683 locus=Lus10032683.g ID=Lus10032683.BGIv1.0 annot-version=v1.0 ATGGAGATTCCCACAATTGATTTCAGTGAGTTTGAAGGAGACGACAGGACCAAAACCATGGCTATTCTGCACGATGCTTGCCTGAATTGGGGTTTCTTTC AGGTTCAGAACCATGGGATCAGCAGCAAGTTGATGGAGAAAGTGAAGCAGCTGGTCGATCAATACTACGAGGAAAACTTGAAAGAGTGCTTTTATCAGTC TGAGACAGCCAAGAAGCTGAACAACAAAGAAAACCCATCATCTGATGTGGATTGGGAAAGTAGCTTCTTCATCCACCATCGCCCATCCTCCAACATTCAC CAGATCCCCAACTTACCTCAAGGTTTCAGTGAAACCATTGATGAGTACATAGCTGAACTAATCAAGCTGGCTGAAAAACTCTCCAATCTAATGTGCGATA GTCTGGGAGTAGACGAAAGCTTCATAAAGGACTCATTCGGCGGGAAAAAGGAAGCCGGCGGCGGCAGTGGCCCTGCGGTGGGAACAAAAGTGGCGAAATA CCCAAAATGTCCAGAGCCGGATCTGGTGAGAGGGCTTCGAGAGCACACCGACGCCGGCGATCATACTCCTTCTTCAGGACGATCAAGTCCTAGGGCTGGA GTTCCTGAAAGATGGGGAATGGGTACAGATTCCTCCGTCCAAGAACAACACGATATTCGTGAACACTGGGGATCAGGTGGAGGTGCTGAGTAA
AA sequence Show only first row Show all	>Lus10032683 pacid=23158976 polypeptide=Lus10032683 locus=Lus10032683.g ID=Lus10032683.BGIv1.0 annot-version=v1.0 MEIPTIDFSEFEGDDRTKTMAILHDACLNWGFFQVQNHGISSKLMEKVKQLVDQYYEENLKECFYQSETAKKLNNKENPSSDVDWESSFFIHHRPSSNIH QIPNLPQGFSETIDEYIAELIKLAEKLSNLMCDSLGVDESFIKDSFGGKKEAGGGSGPAVGTKVAKYPKCPEPDLVRGLREHTDAGDHTPSSGRSSPRAG VPERWGMGTDSSVQEQHDIREHWGSGGGAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	2.0	0.9495
					Lus10022721 [exp]	2.8	0.9401
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	4.2	0.9167
					Lus10021407 [exp]	5.7	0.9393
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10018395 [exp]	5.9	0.8383
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	7.2	0.9349
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	7.7	0.9229
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	7.7	0.9325
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	10.2	0.9170
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	10.4	0.9040

Compare expression of checked genes

Lus10032683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.