Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29540 392 / 9e-137 AtLpxA bacterial transferase hexapeptide repeat-containing protein (.1.2) AT4G05210 66 / 9e-12 AtLpxD1 lipid X D1, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G21220 57 / 5e-09 AtLpxD2 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008565 [exp] 581 / 0 AT4G29540 447 / 6e-158 bacterial transferase hexapeptide repeat-containing protein (.1.2) Lus10020067 [exp] 59 / 2e-09 AT4G21220 342 / 3e-118 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150200 [exp] 421 / 9e-148 AT4G29540 396 / 3e-138 bacterial transferase hexapeptide repeat-containing protein (.1.2) Potri.004G039400 [exp] 58 / 2e-09 AT4G21220 359 / 2e-125 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10032684 pacid=23158969 polypeptide=Lus10032684 locus=Lus10032684.g ID=Lus10032684.BGIv1.0 annot-version=v1.0 ATGAATTCGCTCTATAGAATCCGCCGCCGGCCATTTCCTTCTCTTCTCATCCCCGACTCTCTCCGACGATTCTCCTCATCCACTCTCACTTGTCGTACGG AGGAGGTCTCGCCGACTGCCAAATCTAGCTTCGTTCATCCTTATGCGGTGATTCACCCTAACGCACTGATTGGCGAGGGAGTTTCTATCGGTCCGTTTTG CACTGTTGGATCCTCTGCCAAGCTTGGCAACGGCTGCCATTTGTATCCGGGTAGTCACGTTTTTGGAGATACTGACATCGGGGAGCGTTGTGTTTTGATG GCTGGTGCTGTTGTTGGCGAAGATCTTCCAGGAAGAACAATACTGGGGGCAAATAACATTGTTGGTCATCATGCTGTGATCGGTGTCAAGTGCCAAGACT TGAAATACAAGCTTGGGAACGAATGTTTTCTTCACATTGGAGACAACAACGAGATTAGAGAGCATACATCAATTCATAGGTCTTCAAAGTCAGATAGCAA GACGGTCATTGGTGACAACAATCTGATTATGGGTTCTTGTCATATTGCCCATGATTGCAACATTGGAAACCATAATATTTTTGCTAATAATACTCTTCTC GCTGGACATGTTGTCGTGGAAGATTATGCCCACACGGCTGGTTCAATCGTTGTTCACCAATTTTGTCGCATTGGTTCTTACTCGTTTGTAGGTGGTGGAT CAGTGGTTTCACAAGATGTCCCAAAGTACACTATGGTGGCTGGAGAAAGGGCTGAACTACGTGGTCTGAACTTGGAGGGTCTTCGTCGTCGCGGATTCAC ATCAACAGAGAGTAAGAGCTTGAGAGCAGCTTACAGAAAGATATTCATGCCAGCTTCTGGAAATGCTATGAGTTTTGAAGAACGCCTTGCCATGCTGTGG GACATGAATTTGCAGGAGAAGGATGAAGAACTGAGTAAGGTTTCTGCTGTACGTTCTATGATACAATCTCTGCATGATTCTTTTGGAGAAAGCCGCAGAG GAATTTGCAAATTCAGACAGTGGACTAGCTAG
AA sequence Show only first row Show all	>Lus10032684 pacid=23158969 polypeptide=Lus10032684 locus=Lus10032684.g ID=Lus10032684.BGIv1.0 annot-version=v1.0 MNSLYRIRRRPFPSLLIPDSLRRFSSSTLTCRTEEVSPTAKSSFVHPYAVIHPNALIGEGVSIGPFCTVGSSAKLGNGCHLYPGSHVFGDTDIGERCVLM AGAVVGEDLPGRTILGANNIVGHHAVIGVKCQDLKYKLGNECFLHIGDNNEIREHTSIHRSSKSDSKTVIGDNNLIMGSCHIAHDCNIGNHNIFANNTLL AGHVVVEDYAHTAGSIVVHQFCRIGSYSFVGGGSVVSQDVPKYTMVAGERAELRGLNLEGLRRRGFTSTESKSLRAAYRKIFMPASGNAMSFEERLAMLW DMNLQEKDEELSKVSAVRSMIQSLHDSFGESRRGICKFRQWTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	0	1
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	4.5	0.8410
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	6.7	0.8374
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	7.5	0.8237
AT3G20730			Tetratricopeptide repeat (TPR)...		Lus10027534 [exp]	8.5	0.8110
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	8.8	0.8248
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	10.1	0.8414
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	10.2	0.7924
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	10.8	0.8196
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	11.2	0.8264
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	12.8	0.8350

Compare expression of checked genes

Lus10032684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.