Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56760 377 / 5e-132 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT1G55920 294 / 2e-99 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT3G13110 291 / 5e-97 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT4G35640 243 / 1e-78 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 227 / 4e-73 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008567 [exp] 470 / 4e-169 AT5G56760 482 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10016603 [exp] 293 / 6e-99 AT3G13110 430 / 2e-151 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10040503 [exp] 289 / 3e-97 AT3G13110 434 / 4e-153 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10010679 [exp] 225 / 5e-72 AT4G35640 448 / 6e-159 serine acetyltransferase 3;2 (.1) Lus10007424 [exp] 137 / 4e-38 AT4G35640 294 / 4e-98 serine acetyltransferase 3;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147000 [exp] 405 / 2e-143 AT5G56760 420 / 5e-149 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.013G109500 [exp] 400 / 2e-141 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.001G365500 [exp] 303 / 1e-102 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.005G099700 [exp] 112 / 8e-30 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.011G068001 [exp] 109 / 2e-29 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06426 [flax] [poplar] SATase_N Serine acetyltransferase, N-terminal CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10032686 pacid=23159039 polypeptide=Lus10032686 locus=Lus10032686.g ID=Lus10032686.BGIv1.0 annot-version=v1.0 ATGCCGACGGGGGAACTCCGCCCTCCCTCGCAGCAACCGCCGATGCATCCCACTGCCGCCGAAGACGAGTCCTGGCTATGGGCCCAGATCAAAGCTGAGG CGCGACGTGACGCGGAAGCGGAGCCAGCTCTAGCAAGCTACCTCTACTCCACCATTCTCTCCCACTCTTCCCTTGAGCGATCCCTCGCCTTCCACCTCGG CAACAAACTCTCTTCCCCTACTCTCCTTTCCACTCTCCTCTACGACCTCTTCCTCAACACCTTCTCCTCCGACGCTTCCCTTTGCGCTGCCGCCGTTGCC GACCTACGCGCTGCCCGCGTACGTGACCCCGCTTGCGTCTCCTTCTCCCACTGCCTCCTCAATTACAAGGGTTTCTTGGCTTGTCAGGCGCATCGTGTGG CTCACAAGCTGTGGATGCAATCGCGGCGGCCTTTAGCTCTGGCGCTGCAGTCCCGAGTGTCGGACGTTTTCGCCGTCGACATTCATCCGGCCGCGAGGAT CGGAAAGGGAGTTCTGTTCGACCACGCGACCGGCGTGGTTGTTGGCGAGACGGCGGTGATAGGCAACAACGTGTCGATTCTGCACCACGTGACGCTAGGA GGTACCGGGAAAGCGTGCGGCGATCGTCACCCGAAGATCGGAGACGGAGTTCTGATTGGCGCGGGGGCGACGATCCTGGGGAACGTGAAGATCGGGGAAG GAGCTAAGATTGGTGCGGGGTCGGTGGTGCTGATCAACGTACCAGCAAGGTCAACAGCAGTTGGGAATCCGGCGAGGCTGGTGGGAAGGAAGGAGACGCC GTCGAATGACGAGGAGTGCCCCGGTGAATCCATGGATCACACTTCCTTTATCTCAAACTGGTCTGATTACATTATATAG
AA sequence Show only first row Show all	>Lus10032686 pacid=23159039 polypeptide=Lus10032686 locus=Lus10032686.g ID=Lus10032686.BGIv1.0 annot-version=v1.0 MPTGELRPPSQQPPMHPTAAEDESWLWAQIKAEARRDAEAEPALASYLYSTILSHSSLERSLAFHLGNKLSSPTLLSTLLYDLFLNTFSSDASLCAAAVA DLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWMQSRRPLALALQSRVSDVFAVDIHPAARIGKGVLFDHATGVVVGETAVIGNNVSILHHVTLG GTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLINVPARSTAVGNPARLVGRKETPSNDEECPGESMDHTSFISNWSDYII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	0	1
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	1.0	0.9044
AT3G09050			unknown protein		Lus10027783 [exp]	4.2	0.9002
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	4.5	0.8747
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	7.5	0.8621
AT2G46940			unknown protein		Lus10010083 [exp]	8.5	0.8501
AT1G16840			unknown protein		Lus10033369 [exp]	9.6	0.8132
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Lus10012644 [exp]	9.9	0.8101
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10008359 [exp]	11.6	0.8489
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	11.7	0.8655
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	14.2	0.8083

Compare expression of checked genes

Lus10032686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.