Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41200 110 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008568 [exp] 230 / 9e-79 AT2G41200 138 / 3e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038600 [exp] 132 / 1e-39 AT2G41200 124 / 5e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032687 pacid=23159017 polypeptide=Lus10032687 locus=Lus10032687.g ID=Lus10032687.BGIv1.0 annot-version=v1.0 ATGGGTCAATCTTTGATGAAACTTGCTCCTGGTAAGCTGTTCTTTTCATCATCATCATCGTCTCTGCTTCAATCAATTATAACGGAAATCAACAAAAAGC TCAACAGCACACAGTTCCGCATCCCTGACACCGAGAAGCTGAAGAAAGTCTACAAATCTCACTACAATGATGATAACAGTGAATATGAAAGGAAGAAGAA AACATTGTCCAAAGAGGAGTTCCAAAAGGTGCTTGAAGAAATCATAATCGGAGCAGGATTCACAGGGTTTGGATCCAAGAACATCTTCCTCTACATTTTT GGTGTCCCTGCTGCTGCTATGGTCATCAAACAAAGGATTGCTCCTACCATTATCCCCAACGATGTATTCATCCCTGCCATCACCTCCGCCACCGTCCTCA TCCTCGCCAAACTCAACAAAATATGA
AA sequence Show only first row Show all	>Lus10032687 pacid=23159017 polypeptide=Lus10032687 locus=Lus10032687.g ID=Lus10032687.BGIv1.0 annot-version=v1.0 MGQSLMKLAPGKLFFSSSSSSLLQSIITEINKKLNSTQFRIPDTEKLKKVYKSHYNDDNSEYERKKKTLSKEEFQKVLEEIIIGAGFTGFGSKNIFLYIF GVPAAAMVIKQRIAPTIIPNDVFIPAITSATVLILAKLNKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41200			unknown protein		Lus10032687 [exp]	0	1
AT2G41200			unknown protein		Lus10008568 [exp]	1.0	0.9492
AT2G34540			unknown protein		Lus10028123 [exp]	3.5	0.8953
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	6.6	0.8564
AT5G05365			Heavy metal transport/detoxifi...		Lus10009848 [exp]	6.7	0.8841
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	6.9	0.9040
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	6.9	0.8890
AT3G17950			unknown protein		Lus10006150 [exp]	8.5	0.8532
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10005986 [exp]	9.2	0.8220
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	12.0	0.8719
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	12.2	0.8730

Compare expression of checked genes

Lus10032687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.