Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15690 375 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 267 / 4e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G25580 253 / 5e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 239 / 3e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 234 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 231 / 9e-69 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 224 / 1e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G22070 230 / 3e-67 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G30700 228 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 224 / 3e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008570 [exp] 889 / 0 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014049 [exp] 393 / 2e-131 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019864 [exp] 385 / 1e-128 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028413 [exp] 305 / 2e-96 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041867 [exp] 302 / 3e-95 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 244 / 4e-73 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 243 / 1e-72 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 233 / 4e-72 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 241 / 7e-72 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058300 [exp] 417 / 9e-140 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G116600 [exp] 337 / 1e-108 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 251 / 4e-78 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 238 / 3e-71 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 240 / 4e-71 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.016G053500 [exp] 235 / 3e-70 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.010G086900 [exp] 233 / 4e-69 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 232 / 4e-69 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 231 / 6e-69 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 231 / 1e-67 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032688 pacid=23158950 polypeptide=Lus10032688 locus=Lus10032688.g ID=Lus10032688.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCTTTCGCCTCATCTCCAGCATCCGGGGAACACGATAACATTCTACCCTCTTCGCAACACTTGCCCTCTTCCTCCTTTCTATACAGTCA TCAAAACCATGCTTCCTGCTCCGAGACCTAACAACAAGAACAAATGGCTCTGCTCCTACACCACCCCCAAGCCTCGCAACTCCCCTCCTTCTTCCAAGGT CTATCGCCGCCAAAAGCCCAGGAACCCATCTTCAGACAACCCCAAATCCCGCACCACCACTCCTCCCATAAACGCCGACCAACCAATCCCAAAGGCGCCT GAGGAAGATTCCGTCGATCTGGTCAGCCTTTGCAACGATGGTAAAATTGAAGAAGCAGTAGCTTATTTGACTCAAGCTGGCGTTCCCGCAGCTGGTCATG ATGTGTTCAACGCTTTATTCGACGCCTGCCGGAGCTCCAAGCTCTCGCTCGAGATTTGTAAGAAAGTACACGCATTGCTGAGGCGGTCGCCGTTCGCCGG TGACACCGGGATGGGAAATAAACTAATCCAATTGTACGGAGAAATGGGGAGTGTTAAAGATGCACGCATGGTGTTCGATAGAATGCGCGAGAGAAAAACC ATGGATTCTTGGCATTTGCTGATGAACGCTTATGCAGCGAATGGGCAGGGCCGTGATGGGCTTTTGTTAGTTGAGAAAATGAAGTCGTCTGGTTTGAAAC TCAACGAGGATAGCTTTAGTGCCTTTTTTCGGGTTTGCGCGAGTGCCATGGATGTTGAAGAAGGTTTATTACAACTTGAATCCATGAGTAAAGAGTACGA CATTGTTCCAGGAATCAGACAGTATGTTGAAGTTATTGGCATATTTGGTAGTGCCGGTTACTTGAATGAAGCTGTGGAGTTTGTAGAAGGATTAATGCCA ATTGAACCCACTTTGGAGATTTGGGAGGCTGTTAAGAATTTCGCTAGGCTTCATGGAGATTTAGAGCTGGAAGATCGAATCGGGGAGTTGTTGCTTGCCC TTGATCTGTCGAGAGAAATCGAAATAAAGAACAAAGTTGCATCATTGCCACCTAGAAAGAAGCATTCTGCAACTAACATGGTAGAGGAGAAAAACAGGTT GGCTGAGTATCGTTCTGCAGATCCTTACAAGGAGGATGGAACTGGGGAACTGAAAGGAGGGCTGAATGGCCAGATGAGGGAAGCTGGATATGTTCCAGAC ACGAGATATGTGCTTCATGACATTGACGAGGAAGCTAAGGAGAAGGCATTGATGTATCACAGCGAGAGATTGGCGATTGCGTATGGTTTGATAAGTACCC CAGCAAGGCAGACCCTTAGGATCATGAAGAATCTCAGGATCTGCGGGGACTGTCACAATGCTATAAAGATAATGTCGAGGATAGTTGGGAGGGAGCTTAT TGTTAGAGATAACAAGCGGTTTCATCACTTCAGAGATGGAAGATGTTCCTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10032688 pacid=23158950 polypeptide=Lus10032688 locus=Lus10032688.g ID=Lus10032688.BGIv1.0 annot-version=v1.0 MAASLSPHLQHPGNTITFYPLRNTCPLPPFYTVIKTMLPAPRPNNKNKWLCSYTTPKPRNSPPSSKVYRRQKPRNPSSDNPKSRTTTPPINADQPIPKAP EEDSVDLVSLCNDGKIEEAVAYLTQAGVPAAGHDVFNALFDACRSSKLSLEICKKVHALLRRSPFAGDTGMGNKLIQLYGEMGSVKDARMVFDRMRERKT MDSWHLLMNAYAANGQGRDGLLLVEKMKSSGLKLNEDSFSAFFRVCASAMDVEEGLLQLESMSKEYDIVPGIRQYVEVIGIFGSAGYLNEAVEFVEGLMP IEPTLEIWEAVKNFARLHGDLELEDRIGELLLALDLSREIEIKNKVASLPPRKKHSATNMVEEKNRLAEYRSADPYKEDGTGELKGGLNGQMREAGYVPD TRYVLHDIDEEAKEKALMYHSERLAIAYGLISTPARQTLRIMKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFRDGRCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	0	1
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	1.0	0.9441
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	1.7	0.9237
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	2.0	0.9372
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	4.9	0.9205
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	6.5	0.9199
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	7.4	0.9202
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	8.8	0.9141
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	9.8	0.8887
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	11.2	0.9146
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	11.4	0.9145

Compare expression of checked genes

Lus10032688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.