Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29890 530 / 0 choline monooxygenase, putative (CMO-like) (.1) AT1G44446 45 / 8e-05 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008571 [exp] 842 / 0 AT4G29890 528 / 0.0 choline monooxygenase, putative (CMO-like) (.1) Lus10000218 [exp] 45 / 7e-05 AT1G44446 858 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10042718 [exp] 42 / 0.0008 AT1G44446 844 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10029678 [exp] 42 / 0.0009 AT1G44446 859 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10000214 [exp] 42 / 0.001 AT1G44446 856 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072800 [exp] 621 / 0 AT4G29890 557 / 0.0 choline monooxygenase, putative (CMO-like) (.1) Potri.002G083200 [exp] 45 / 6e-05 AT1G44446 799 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.005G178300 [exp] 44 / 0.0002 AT1G44446 843 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10032689 pacid=23158945 polypeptide=Lus10032689 locus=Lus10032689.g ID=Lus10032689.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTGATGGCCTCGCCGGAGACTATCAAAATCACTGTCCAGCCAACTCTCAACCGCAAAGCTGGCAACGCTGTCTTCCACTGGAATCCGATCA TTAGAAATACAAGTCAACAGCTGCGTCGTCGTCGGAGGCCGATCATTGTTGGCAGTAGCAGCGCTGGTCAGAGTTGGAAACGATCTCACTGTGAAAACCT TGTTCATGAGTTCGACCCAACTATTCCGATCGAGAAAGCCCTGACTCCACCCAGCTCCTGGTACACTGATTCTTCCTTGTACGATTTTGAGCTCAGTCGT GTCTTCTACAGAGGGTGGCAAGCCGTCGGCTATACTGAGCAGATAAAGGAGCCTCGTGACTTTTTCACTGGAAGATTAGGGAACGTAGAATTCGTGGTGT GTCGAAATGACGGTGGCAAAATTGAAGCTTTTCACAATGTCTGCCGTCATCATGCTTCTCTTGTTGCATCTGGAAGTGGGCAGAAATCTTGCTTTGTATG CCCTTATCATGGATGGACATATGGGTTAGATGGATCCCTCCGCAAAGCAACAAGGATTACAGAGATCCACAACTTCGATGTAAATGACTTTGGGCTTATT CCAATAGATGTGGCGGTTTGGGGACCTTTTGTTCTTCTCAATCTAGAGAGGAACTGTAGTCGTCCTAAGTATGATGTTGACGACGATAATCTAGTAGCGA ATGAATGGCTCGGCAGCACCTCCGAAATACTCAAGTCCGGTGGGGTTGATGCTTCTCTAAGCTATCTTTTTAGGCGCGAGTACACAATTGAATGCAACTG GAAGGTGTTTTGTGATAACTATTTGGATGGGGGTTACCATGTCCCATATGCTCACAAAGGCCTTGCATCTGGTCTGGAGCTTGATTCATACTCCACCACG ACCTACGAAAAGGTCAGCATCCAAAGTTGTGAAGGTGCCTCAACCGAAAGGCTGGGATCCAAGGCTTTATATGCTTTTATATACCCAAATTTCATGATTA ATCGGTACGGACCTTGGATGGACACTAATCTGGTAGTCCCGTTAGGACCGAGAAAATGCCGAGTTATATTTGACTACTTCATTGAACATCATCTCAAGGA TGACAAGTCTTACATTGAGCAAAGCATCATCGATAGCGAAAAAGTTCAGATGGAAGACAGTATCCTGTGTGAAGGTGTACAAAGAGGCCTGGAATCACCA GCTTACTGCACCGGCAGATATGCACCAACCGTCGAGAACGCTATGTACCATTTCCACCAACTGCTTCATAGTGATCTTTCTTAG
AA sequence Show only first row Show all	>Lus10032689 pacid=23158945 polypeptide=Lus10032689 locus=Lus10032689.g ID=Lus10032689.BGIv1.0 annot-version=v1.0 MAAVMASPETIKITVQPTLNRKAGNAVFHWNPIIRNTSQQLRRRRRPIIVGSSSAGQSWKRSHCENLVHEFDPTIPIEKALTPPSSWYTDSSLYDFELSR VFYRGWQAVGYTEQIKEPRDFFTGRLGNVEFVVCRNDGGKIEAFHNVCRHHASLVASGSGQKSCFVCPYHGWTYGLDGSLRKATRITEIHNFDVNDFGLI PIDVAVWGPFVLLNLERNCSRPKYDVDDDNLVANEWLGSTSEILKSGGVDASLSYLFRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLELDSYSTT TYEKVSIQSCEGASTERLGSKALYAFIYPNFMINRYGPWMDTNLVVPLGPRKCRVIFDYFIEHHLKDDKSYIEQSIIDSEKVQMEDSILCEGVQRGLESP AYCTGRYAPTVENAMYHFHQLLHSDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	0	1
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	1.7	0.9587
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	2.0	0.9554
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	3.5	0.9523
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	3.7	0.9461
AT2G23770			protein kinase family protein ...		Lus10016794 [exp]	5.5	0.9392
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	5.7	0.9509
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	6.9	0.9369
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	8.4	0.9420
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	8.8	0.9414
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	10.4	0.9359

Compare expression of checked genes

Lus10032689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.