Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26180 494 / 3e-177 Mitochondrial substrate carrier family protein (.1) AT1G14560 360 / 3e-124 Mitochondrial substrate carrier family protein (.1) AT4G01100 209 / 6e-65 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 176 / 3e-52 Mitochondrial substrate carrier family protein (.1) AT3G53940 171 / 3e-50 Mitochondrial substrate carrier family protein (.1) AT3G55640 170 / 3e-50 Mitochondrial substrate carrier family protein (.1) AT5G61810 164 / 7e-48 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G51870 164 / 2e-47 Mitochondrial substrate carrier family protein (.1) AT5G01500 159 / 4e-45 TAAC thylakoid ATP/ADP carrier (.1) AT5G51050 159 / 1e-44 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008572 [exp] 687 / 0 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 372 / 7e-129 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 205 / 3e-63 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 204 / 4e-63 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 202 / 3e-62 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 197 / 3e-60 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 174 / 2e-51 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 165 / 6e-48 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 160 / 4e-46 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153600 [exp] 568 / 0 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 389 / 1e-135 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 208 / 1e-64 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 205 / 2e-63 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 203 / 1e-62 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 202 / 2e-62 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 174 / 1e-51 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 172 / 4e-51 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 172 / 1e-50 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 164 / 9e-48 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10032690 pacid=23159009 polypeptide=Lus10032690 locus=Lus10032690.g ID=Lus10032690.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGTAAGAGAGAGGAAAGAGATGTCGGCTCTTTGTACGTCGAGGGACTGATAGATAACATGCCCATTTTCGCCAAGGAGCTCGTCGCCGGTG GGGTTGCTGGTGGCTTTGCCAAGACTGTTGTAGCTCCCCTCGAACGTGTCAAGATTCTTTTCCAGACTAGAAGAGATGAATTCAAGGCTATTGGGCTGCT TGGTTCAATAAACAAGATTGGAAGAACTGAAGGGATTAAAGGATTCTATAGAGGAAATGGAGCTAGTGTTGCTCGAATAGTGCCTTATGCTGCCCTGCAT TATATGACATATGAGCAATATCGTAGATGGATCATACACAGTTTTCCAGATGTAGGGAGGGGTCCTGTCCTCGATCTTGTGGCGGGTTCCTTTGCTGGAG GAACAGCTGTTCTTTTCACCTATCCTCTTGACTTAGTTCGAACCAAACTCGCTTACCAGGTTGTTGGTGTGCCGAAATTAAACATGCGTGGGGCTGTCGG TTCTGAGCAAATGTATAGAGGCATAGCTGATTGTTTTTCTCAGACTTTCCGAGAGTCTGGCCTCCGAGGTCTCTATCGTGGTGTTGCCCCATCTTTATAC GGAATCTTCCCTTATGCTGGTTTGAAGTTTTACTTCTACGAGGAGATGAAACGGCACGTCCCTGAGAAGCACAAGAAAGATATTGCAGTGAAGTTGGTTT GTGGATCAGTGGCTGGCTTATTAGGCCAGACATTCACATACCCTCTTGATGTTGTCAGGAGGCAAATGCAGGTGGAAAGGCTTTCCGCATCTAGTAGCGC AGAGCTGAAAGGAACAATGGAGACCCTTTTCATGATCGCAGAAAAGCAAGGGTGGAAGCAATTATTTTCAGGACTGAGTATAAACTACCTGAAGGTTGTT CCATCTGTGGCGATCGGTTTTACAGTGTATGATGTTGTGAAATCACGCCTGAGAGTACCGTCGCGGGAAGTTTTGGACGCGGTAACTGACAACAGGAACA ATCAACAAAATTTGCATTCATAA
AA sequence Show only first row Show all	>Lus10032690 pacid=23159009 polypeptide=Lus10032690 locus=Lus10032690.g ID=Lus10032690.BGIv1.0 annot-version=v1.0 MAKSKREERDVGSLYVEGLIDNMPIFAKELVAGGVAGGFAKTVVAPLERVKILFQTRRDEFKAIGLLGSINKIGRTEGIKGFYRGNGASVARIVPYAALH YMTYEQYRRWIIHSFPDVGRGPVLDLVAGSFAGGTAVLFTYPLDLVRTKLAYQVVGVPKLNMRGAVGSEQMYRGIADCFSQTFRESGLRGLYRGVAPSLY GIFPYAGLKFYFYEEMKRHVPEKHKKDIAVKLVCGSVAGLLGQTFTYPLDVVRRQMQVERLSASSSAELKGTMETLFMIAEKQGWKQLFSGLSINYLKVV PSVAIGFTVYDVVKSRLRVPSREVLDAVTDNRNNQQNLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26180			Mitochondrial substrate carrie...		Lus10032690 [exp]	0	1
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10030707 [exp]	5.2	0.6286
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012445 [exp]	70.9	0.5821
AT1G65440		GTB1	global transcription factor gr...		Lus10029078 [exp]	145.8	0.5441
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	159.6	0.5313
AT5G57300			S-adenosyl-L-methionine-depend...		Lus10037553 [exp]	247.5	0.5041

Compare expression of checked genes

Lus10032690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.