Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53770 461 / 6e-157 Nucleotidyltransferase family protein (.1) AT4G29530 66 / 1e-11 Pyridoxal phosphate phosphatase-related protein (.1) AT4G00060 64 / 3e-10 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) AT1G73010 57 / 9e-09 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT2G45620 57 / 3e-08 Nucleotidyltransferase family protein (.1) AT1G17710 56 / 3e-08 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT2G39740 47 / 4e-05 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008574 [exp] 820 / 0 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10008573 [exp] 88 / 2e-19 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10001479 [exp] 64 / 7e-11 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008479 [exp] 62 / 2e-10 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015886 [exp] 61 / 3e-09 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10037650 [exp] 59 / 4e-09 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 56 / 4e-08 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037652 [exp] 54 / 1e-07 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 52 / 6e-07 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G400800 [exp] 528 / 0 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.018G054800 [exp] 66 / 2e-11 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.008G196800 [exp] 61 / 6e-10 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.002G151000 [exp] 61 / 2e-09 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.003G034600 [exp] 58 / 6e-09 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.014G066000 [exp] 58 / 2e-08 AT4G00060 1491 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 53 / 4e-07 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 53 / 6e-07 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase CL0137 [flax] [poplar] PF03828 [flax] [poplar] PAP_assoc Cid1 family poly A polymerase CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10032691 pacid=23159020 polypeptide=Lus10032691 locus=Lus10032691.g ID=Lus10032691.BGIv1.0 annot-version=v1.0 ATGGAGCCACCGGCCGATGTGCCGGTCCCTCTCTACGATACCCTAGTCGTTCTTCCACTTACGTCCTCCGCCCCCACATCGCCATCCGCTGCTAACCAAT CCCCTCAGCCGCCTCAATCTCCAGAGCCCTACACAGTTCTCCGCAATGAGATATCTCTCTCCACCCTTCCTTCCGCCGCCCTCGAGGAGTCCGCTGCAGC CGATTTCTTCTCTCTTGATGTTGGGGACGATGAAGCTGAGGAAGATTTTAGGACTCCGAAGGGTCATTCAGAGGTGAACCGTCCAGTTATTACAAGGACG GCTGAGTCGATGCTTGATGTCGATCCCATGCTGGAGAGTGGGTGGTTTCGAGGGAACAGTAAGTTCAAGAGTCCAATGCTTCAGCTGCATAAAGAGATAG TCGATTTCTCCGATTTCCTGTCCCCTACCCTTGAAGAGCAAGCTACACGCAGTGCAGCAGTGCAATCTGTTTGTGATGTTATCAAATACATATGGCCTAG TTGCCAGGTGGAAGTTTTTGGGTCATTTAGGACCGGTCTTTATCTTCCAACAAGTGATATTGATGTTGTAATTTTGAGTTCGCATGTCATCACTCCGCAA ACTGGTTTGCGAGCTATTTCAAGGGCTTTGTCTCAAAGAGGAATTGCAAAGAAGATACAGGTCATTGCCAAGGCTCGTGTGCCAATCATTAAGTTTGTAG AAATGAGAAGTGGCCTTTCATTTGATATAAGGTGTGGAGGCAAGCAATATCTGCTTGGCAGCCCTGCTCCCGAACACCTCAAGCTAGATATTACTAATTT TGATGTGGACAATGGTCCAAAAGCTGCTGATTTTATAAAGGTATATACTGGTGGGATAGGTTCTTATGCGCTGCTTACCATGCTGATGGCCGCGTTAAAG AATCAGAGTTCGGAACGTTCTTCTCCAGAGCACAATTTGGGAATTCTTTTGATAAACTTTTTTGATCTATATGGGCGCAAATTGAACGTCACTGATGTAG GTGTCTCTTGCGGAGGATTCTTTTCAAAGCATAGAAAGGGGTTTATGAATAACGGGAGGCCATTTCTCATCTCCATCGAGGACCCACAGACGCCCCAGAA TGACATTGGCAAGAACTCCTTCAATTATTTCCAGGTTAGATCAGCATTTGCCATGGCCTATTCAACGTTGACGAATCCGAAGACAATCTTCGCATTGGGG CCAAACAGGAGTATCCTGGGCACCATCATTAGGCCGGATAAGGTTCTGCTTCAGCGCAAAGGAGGAAAGAACGGTGACGTGACTTTCAACAGCTTGTTAC CTGGAGCTGGAGAGCCGTTGATGTCAAAATATGATCACCAGGACGTACTGTACAATTGGCAGTTGGAAGATGAGGAGGAAGCATTACCTCGGGGAAACAG GTTTGCTGCCGACGAGAACCTTTCCTCCTCTGGGAAGAAGAGGAAATCATCGTCTTTAGCAGCAAAAAAATCGAAAAAGAAGAGGTTAAAAGAAGAGAGA GGGGAGTGGTTCGAGGAGGGTTCCCCTAGCCAGGAGAAGGGATCAAGAAAGAAGAAAGCACGGTGGAGACATAATCATCGTAAGGTTACTTTATGTGATT TGAGAGTCATTAGTGATGCAACCCTCTTTTTCATTGAGAAAATCTTGGACCATCATGGATTGTTGGGATGCTTCTCGCAAATCAACACGAATCCAGCTAC CTTAGATGAGCATGGGAAGGCACAAGTTCACGAATGGACTGATGGCGAGGAGCTTGCGAAAATCCTTCTCCAACTTATTCATGCTGTCTGTGCCGATATG AAGCCAACTGGGTAA
AA sequence Show only first row Show all	>Lus10032691 pacid=23159020 polypeptide=Lus10032691 locus=Lus10032691.g ID=Lus10032691.BGIv1.0 annot-version=v1.0 MEPPADVPVPLYDTLVVLPLTSSAPTSPSAANQSPQPPQSPEPYTVLRNEISLSTLPSAALEESAAADFFSLDVGDDEAEEDFRTPKGHSEVNRPVITRT AESMLDVDPMLESGWFRGNSKFKSPMLQLHKEIVDFSDFLSPTLEEQATRSAAVQSVCDVIKYIWPSCQVEVFGSFRTGLYLPTSDIDVVILSSHVITPQ TGLRAISRALSQRGIAKKIQVIAKARVPIIKFVEMRSGLSFDIRCGGKQYLLGSPAPEHLKLDITNFDVDNGPKAADFIKVYTGGIGSYALLTMLMAALK NQSSERSSPEHNLGILLINFFDLYGRKLNVTDVGVSCGGFFSKHRKGFMNNGRPFLISIEDPQTPQNDIGKNSFNYFQVRSAFAMAYSTLTNPKTIFALG PNRSILGTIIRPDKVLLQRKGGKNGDVTFNSLLPGAGEPLMSKYDHQDVLYNWQLEDEEEALPRGNRFAADENLSSSGKKRKSSSLAAKKSKKKRLKEER GEWFEEGSPSQEKGSRKKKARWRHNHRKVTLCDLRVISDATLFFIEKILDHHGLLGCFSQINTNPATLDEHGKAQVHEWTDGEELAKILLQLIHAVCADM KPTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	0	1
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	1.7	0.8846
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	4.6	0.8557
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	5.1	0.8263
AT5G55600			agenet domain-containing prote...		Lus10003906 [exp]	5.9	0.8518
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	8.4	0.8474
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10000343 [exp]	10.2	0.7999
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	10.5	0.8459
AT4G32910			unknown protein		Lus10038723 [exp]	12.1	0.8661
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	13.2	0.8532
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	15.4	0.8554

Compare expression of checked genes

Lus10032691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.