Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29520 308 / 3e-104 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008575 [exp] 485 / 5e-174 AT4G29520 359 / 4e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067300 [exp] 310 / 3e-105 AT4G29520 337 / 3e-116 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032692 pacid=23159048 polypeptide=Lus10032692 locus=Lus10032692.g ID=Lus10032692.BGIv1.0 annot-version=v1.0 ATGGCTGTTCTGGCGGTGCTGGTTTTCTCGGCGGTATGGGTTCCGGCTTCGGTCTTCTCTAAGAAAGCCGAAACAGCTGCGAGGAGAGAGGATGTTCCGT TTATCAGGTGCCAAGTATGTCAGATGATCGCTGCACAACTGCAGCAGCAAGTTCAAAACAAGCAAGCCCAGATCTCTCCCAAGAAGGTCAATTTGGTTTT GGCTGATTATCATTGCTGGGATTTGGCTGGTTTATGGATTGAATTCAGGGAGTCTTATGATTTTTTGTTGTCGTTGTTTGGATTTCAGATCTCTGAGTAC CAAATCATTGAGATTGCGGAGAATGTGTGCAATTTGAAGAAGGAAGAGGCTGATTGGATTACGCGGATTGATATAGTGGAAAAAGGAGACAAGTTGGAGT TGGTGGAGCAAGAAGAGGAAGGTATGTGCAATGCGGAATGTAAGACGATTGAGAAAGCCTGCCAAGAGGTTATGGGATATTCTGATACTGATGTCGCCGA GTACATGTATAGTTCTAAGCCTCAGCTTGATAAGTTGACCAACTATCTCTGCAAGGACCTGTCCGGAGCTTGCACTAAGAAGACACCTCTAGTCCCCAAG GATAGGATTCCCGGGGAGGCATTTACTCCAAAACCGTCTAAGCAGGCTGAAATGGACAAGATCATGAGATCAATGGAGGGCATGCCTGGAGCACCGGGAA TGAAAATGTATTCGAGAGAGGAACTAATGAACAATATGAATATCGGTAATGAAGATGCCGATGATGAGGACGATGAAGATGCCGATGATGAGGACGATGA AGATGCTGCGGAACAACCAAATTTCCCAAAGAATCTGGGCAAAGTTCTAAGAGAGAAAGAGAAGACGGGGGAAAAGGAGGACTGGAAGAAGAAGATGACG AAACAAGTGGTGAGCACAGGTGATACGCTAAAGAAGCATGCACAAAGGGTGTCCAACAGAGTCAGGCAATGGTGGAAAGGAATGAAGAAGCAGAAGAAGA CTTCCAGGACTGGCAAATCGGAGCTCTAG
AA sequence Show only first row Show all	>Lus10032692 pacid=23159048 polypeptide=Lus10032692 locus=Lus10032692.g ID=Lus10032692.BGIv1.0 annot-version=v1.0 MAVLAVLVFSAVWVPASVFSKKAETAARREDVPFIRCQVCQMIAAQLQQQVQNKQAQISPKKVNLVLADYHCWDLAGLWIEFRESYDFLLSLFGFQISEY QIIEIAENVCNLKKEEADWITRIDIVEKGDKLELVEQEEEGMCNAECKTIEKACQEVMGYSDTDVAEYMYSSKPQLDKLTNYLCKDLSGACTKKTPLVPK DRIPGEAFTPKPSKQAEMDKIMRSMEGMPGAPGMKMYSREELMNNMNIGNEDADDEDDEDADDEDDEDAAEQPNFPKNLGKVLREKEKTGEKEDWKKKMT KQVVSTGDTLKKHAQRVSNRVRQWWKGMKKQKKTSRTGKSEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29520			unknown protein		Lus10032692 [exp]	0	1
AT4G29520			unknown protein		Lus10008575 [exp]	2.4	0.8688
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	15.5	0.8496
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10014584 [exp]	18.2	0.8510
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10022296 [exp]	25.8	0.8469
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	26.6	0.8335
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	37.5	0.8350
AT1G34350			unknown protein		Lus10017068 [exp]	37.9	0.8230
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10033135 [exp]	38.7	0.8148
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015160 [exp]	46.0	0.8157
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	62.7	0.8052

Compare expression of checked genes

Lus10032692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.