Plant FIBer expression Database

Lus10032694 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29490 688 / 0 Metallopeptidase M24 family protein (.1)
AT1G09300 103 / 3e-23 Metallopeptidase M24 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008578
[exp]
881 / 0 AT4G29490 768 / 0.0 Metallopeptidase M24 family protein (.1)
Lus10037379
[exp]
85 / 1e-19 AT4G29490 59 / 3e-11 Metallopeptidase M24 family protein (.1)
Lus10010905
[exp]
89 / 3e-18 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2)
Lus10031427
[exp]
84 / 9e-17 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G149500
[exp]
746 / 0 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1)
Potri.013G007100
[exp]
94 / 6e-20 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00557 Peptidase_M24 Metallopeptidase family M24
CL0356 AMP_N-like PF05195 AMP_N Aminopeptidase P, N-terminal domain
Representative CDS sequence
>Lus10032694 pacid=23158954 polypeptide=Lus10032694 locus=Lus10032694.g ID=Lus10032694.BGIv1.0 annot-version=v1.0
ATGGAGCTCTACGTCTCCAACCGCGAGAAGCTTATCAAATCCATCAACCAGCATCTCACCGAAGCTTCTCGTCCTCTTCAGGGCTTCGTCCTTCTTCAGG
GAGGTGAAGAACAGACTCGTTACTGCACCGATCATTCAGAGCTCTTCAGGCAGGAGAGTTACTTCGCCTATTTGTTTGGAGTTGTGGAGTCTGGTTTCTA
CGGAGCTATTGACATCTCAACAGGGAAGTCTATCCTCTTTGCTCCCAGACTACCTGCTGAGTATGCTGTTTGGATGGGAAAAATTAAGCCACCATTGTAC
TTTCAGGAGAAATACCAAGTCAACGCAGTATACTACACCGATGAAATTGTAGAAGTTTTGCATGACCATAGTAAGGGAGTTGAGAAGCCGTTACTGTTTC
TCTTGCATGGACTGAACACTGACAGCAACAATTACTCAAAACCAGCTAGTTTTAAGGGAATGGAAACATTTGAAACTGACCTAAATGTTTTGCATCCTAT
TTTAACTGAATGTCGTGTCATCAAGTCAGACCTGGAGCTTGCTGTAATTCAGTTTGCCAACGATATAAGCTCAGAGGCTCATGTTGAGGTTATGAGAAAC
TGTAAAGCTGGAACGAAAGAGTATCAGTTGGAAAGTACATTTCTACACCACACCTACATGTATGGTGGTTGTCGACATTGCTCATACACATGCATCTGTG
CTACTGGTGATAACAGCGCCGTTCTTCACTATGGCCATGCAGCAGCCCCTAATGACAGGACCTTGCAAGATGGAGATATGGCACTGTTCGATATGGGAGC
TGAATACCATTTCTATGGTTCTGACATAACTTGTTCATTTCCTGTGAATGGCAAGTTTACAAGTGACCAATCTTTAATTTACAACGTGAGTGTGATTCAA
CTTGCTTCATCATTTAATTATGTGTTCATGAACATGAGGAAACTTACAGGAGCTCTGTTATCCTTCCTAGTGTTATCTGTGTATTCAGTAGTTATTACCA
TTGCTCGTGTCCAGGCTGTTCTTGATGCACACAATACTGTAATATCTGCTATGAAGCCAGGAGTCACCTGGATTGACATGCACAAGTTGGCAGAGACGGT
CATCCTTCAATCTTTGAAGACCGGTGGCATTATTGTTGGTAACATAGAAGATATGATGGCTGAGCGATTTGGCGCTGTTTTCATGCCACATGGGTTGGGG
CATTTCCTTGGTCTTGACACCCATGATCCTGGTGGTTACTTGAAAGTGCGTTTCACTGATTTTCTTTTCTTTCCTGTTCCTTGGTATTGGCCATGGACTG
ACACAAGCAGCACATGTACTCCAGGGACTGAAGAAACCAACAGAACCAGGGTTAAGTTCTTTGCGTACCGTAAGAGAACTCAAAGAGGGAATGGTATGAG
ACTGTCGCAATGCTATAAAGTGATAACGGTAGAGCCAGGCTGCTATTTCATCGATGCTTTGTTAATCCCAGCAATGACAAACCCAAAAACTTGCAAGTTC
TTCAATGCTGAGGCCATCGGGAGATTCAAAGGCTTTGGTGGTGTTCGCATTGAAAGTGATCTGGCAGATAATTTTGCTGATTTGCAGCATGAGATTCTTT
TTATAATCCTGACATTAGTATGTTTTGGTTGGAATGGTGATGTGCAGCATGTTACGGCCGATGGGTGCAAGAACATGACTAATTGTCCAAGGGAGGTTTC
GGATATTGAAGCAGTAATGGCAGGAGCGCCATGGCCAGGTGCCAACCAGCCAAGCCTCTAA
AA sequence
>Lus10032694 pacid=23158954 polypeptide=Lus10032694 locus=Lus10032694.g ID=Lus10032694.BGIv1.0 annot-version=v1.0
MELYVSNREKLIKSINQHLTEASRPLQGFVLLQGGEEQTRYCTDHSELFRQESYFAYLFGVVESGFYGAIDISTGKSILFAPRLPAEYAVWMGKIKPPLY
FQEKYQVNAVYYTDEIVEVLHDHSKGVEKPLLFLLHGLNTDSNNYSKPASFKGMETFETDLNVLHPILTECRVIKSDLELAVIQFANDISSEAHVEVMRN
CKAGTKEYQLESTFLHHTYMYGGCRHCSYTCICATGDNSAVLHYGHAAAPNDRTLQDGDMALFDMGAEYHFYGSDITCSFPVNGKFTSDQSLIYNVSVIQ
LASSFNYVFMNMRKLTGALLSFLVLSVYSVVITIARVQAVLDAHNTVISAMKPGVTWIDMHKLAETVILQSLKTGGIIVGNIEDMMAERFGAVFMPHGLG
HFLGLDTHDPGGYLKVRFTDFLFFPVPWYWPWTDTSSTCTPGTEETNRTRVKFFAYRKRTQRGNGMRLSQCYKVITVEPGCYFIDALLIPAMTNPKTCKF
FNAEAIGRFKGFGGVRIESDLADNFADLQHEILFIILTLVCFGWNGDVQHVTADGCKNMTNCPREVSDIEAVMAGAPWPGANQPSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G29490 Metallopeptidase M24 family pr... Lus10032694
[exp]
0 1
AT5G11470 bromo-adjacent homology (BAH) ... Lus10037903
[exp]
2.0 0.8991
AT2G26200 S-adenosyl-L-methionine-depend... Lus10024993
[exp]
4.6 0.8744
AT2G24640 UBP19 ubiquitin-specific protease 19... Lus10026918
[exp]
4.9 0.8899
AT2G24640 UBP19 ubiquitin-specific protease 19... Lus10020116
[exp]
7.7 0.8567
AT1G50200 ACD, ALATS Alanyl-tRNA synthetase (.1.2) Lus10010210
[exp]
8.1 0.8257
AT1G60220 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-... Lus10030622
[exp]
8.5 0.8626
AT3G51500 unknown protein Lus10017918
[exp]
9.5 0.8479
AT1G79490 EMB2217 embryo defective 2217, Pentatr... Lus10037517
[exp]
11.8 0.8563
AT5G51410 LUC7 N_terminus domain-contain... Lus10031156
[exp]
13.1 0.8487
AT4G12010 Disease resistance protein (TI... Lus10019654
[exp]
15.5 0.8565

Lus10032694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.