Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26200 660 / 0 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G37770 553 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT3G49700 549 / 0 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT5G65800 543 / 0 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G08040 528 / 0 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT2G22810 526 / 0 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT3G61510 508 / 2e-178 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT4G11280 501 / 1e-175 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT1G01480 497 / 3e-174 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT5G51690 398 / 2e-135 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008579 [exp] 903 / 0 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 567 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 533 / 0 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 530 / 0 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007910 [exp] 522 / 0 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10036396 [exp] 516 / 0 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10017521 [exp] 505 / 3e-177 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10007714 [exp] 494 / 9e-174 AT3G49700 585 / 0.0 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) Lus10024673 [exp] 494 / 6e-173 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149600 [exp] 729 / 0 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.018G067000 [exp] 721 / 0 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.014G012600 [exp] 558 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 558 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 550 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G163700 [exp] 548 / 0 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.001G099400 [exp] 528 / 0 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 527 / 0 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G117700 [exp] 412 / 7e-140 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.015G132100 [exp] 408 / 2e-138 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10032695 pacid=23158962 polypeptide=Lus10032695 locus=Lus10032695.g ID=Lus10032695.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGCTTGAGCAGCAGCAACCCAAACCGGTCGAGCTATCAAGAGTGGCGGTCTCAGAGACCCACGGAGAAGACTCTCCATACTTCGCAGGTT GGAAAGCCTACGACGAAAACCCATACGACGAAACCACCAACCCAACCGGAGTCATCCAGATGGGTCTGGCCGAAAACCAGGTCTCCTTCGACTTGTTGGA AGACTATCTCGCAAAACATCCAGAAGCTTCTTCGACAACCCACAATTTCAAAGAGAACGCTCTTTACCAAGACTACCACGGCCTCAAGTCCTTCCGCCAG GCAATGGCTAGCTTCATGTCCCAAATCCGCGGCGGCAGAGCCACATTCGACCCGGACCGGATCGTCCTGACCGCCGGAGCCACAGCTGCAAACGAGCTCC TCACCTTCATCCTCGCCAACCCGGGCGATGCCCTGCTGGTCCCCACCCCGTACTACCCGGGGTTCGACCGTGACCTCAGGTGGAGGACAGGTGTCAAGAT CGTACCTATCCATTGCAACAGCTCCACCAACTTCCAAGTCACCAAGGAAGCATTAGAAGCCGCGTACGACGACGCTGTTTCGATGGGATTAAAAGTCCGC GCGGTCCTCATCACAAACCCTTCCAACCCACTAGGCGCCACTGTCCAGCGGGTTGTCCTCGAGGAGATCCTCGATTTCTCCGTGGAGAAGAACATCCACT TAGTCTCGGACGAGATATACTCCGGGTCAACTTTCTCCCCGGACGAGTTCGTCAGCATTGCCGAGGTCGTGAACGACCGCGGGAGCATCCGGTCCGAGTC CGAGCGGGTCCACATAGTGTACAGCCTGTCGAAAGACTTGGGCCTACCGGGGTTCCGAGTGGGGACCATCTATTCCTACAACGACGCCGTAGTGACTACC GCAAGAAGGATGTCGAGTTTCACTTTGATATCTTCCCAAACGCAGCATTTGCTCGCGTGCATGCTTTCCAACGCGGAGTTCACTGAAAACTACATAAGCA AGAATAGGGAGAGGCTGAGGAAGAGGTACGAAATGATCATATCCGGGCTGAGGCGGGCCGGGATCGAGTGTCTGGAAGGGAACGCGGGCTTGTTTTGCTG GATGAACATGGGTCCGGTACTTGTGGAGCCCACCAGAGAAGCCGAGCTGTCCCTTTGGAAGCTGATACTCAAGGATGTGAGGCTGAATATATCTCCCGGG TCGTCGTGTCACTGCTCCGAACCGGGTTGGTTTCGGGTGTGTTTCGCGAATATGAGTGAGGGCACTCTGGATATTGCGTTGGAGAGGTTGCGAGTGTTCA TGGAAGACTATCGTATTCGGATGAGGAGCAATTGA
AA sequence Show only first row Show all	>Lus10032695 pacid=23158962 polypeptide=Lus10032695 locus=Lus10032695.g ID=Lus10032695.BGIv1.0 annot-version=v1.0 MAIELEQQQPKPVELSRVAVSETHGEDSPYFAGWKAYDENPYDETTNPTGVIQMGLAENQVSFDLLEDYLAKHPEASSTTHNFKENALYQDYHGLKSFRQ AMASFMSQIRGGRATFDPDRIVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCNSSTNFQVTKEALEAAYDDAVSMGLKVR AVLITNPSNPLGATVQRVVLEEILDFSVEKNIHLVSDEIYSGSTFSPDEFVSIAEVVNDRGSIRSESERVHIVYSLSKDLGLPGFRVGTIYSYNDAVVTT ARRMSSFTLISSQTQHLLACMLSNAEFTENYISKNRERLRKRYEMIISGLRRAGIECLEGNAGLFCWMNMGPVLVEPTREAELSLWKLILKDVRLNISPG SSCHCSEPGWFRVCFANMSEGTLDIALERLRVFMEDYRIRMRSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10032695 [exp]	0	1
					Lus10041112 [exp]	2.0	0.9181
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	9.2	0.9142
					Lus10040377 [exp]	12.8	0.9048
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	20.3	0.9049
AT4G02870			unknown protein		Lus10008543 [exp]	25.6	0.8513
AT1G76360			Protein kinase superfamily pro...		Lus10012256 [exp]	30.8	0.8959
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10033872 [exp]	31.4	0.8737
AT4G25030			unknown protein		Lus10036514 [exp]	39.6	0.8973
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	41.9	0.8821
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014083 [exp]	46.0	0.8959

Compare expression of checked genes

Lus10032695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.