Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29410 50 / 4e-08 Ribosomal L28e protein family (.1.2) AT2G19730 0 / 1 Ribosomal L28e protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032699 [exp] 104 / 9e-29 AT4G29410 219 / 1e-74 Ribosomal L28e protein family (.1.2) Lus10012915 [exp] 102 / 3e-28 AT4G29410 224 / 1e-76 Ribosomal L28e protein family (.1.2) Lus10012914 [exp] 102 / 3e-28 AT4G29410 224 / 7e-77 Ribosomal L28e protein family (.1.2) Lus10012913 [exp] 72 / 1e-15 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037609 [exp] 40 / 0.0002 AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045500 [exp] 0 / 1 AT2G19730 230 / 3e-79 Ribosomal L28e protein family (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032698 pacid=23159037 polypeptide=Lus10032698 locus=Lus10032698.g ID=Lus10032698.BGIv1.0 annot-version=v1.0 ATGCCTGCTGCGGGTGCTGCTGATTCTACCACCCCAGGGGGGGCAGGGAGTTCACTATACAGTTCAACAAATCACTCTCTGCAGATCCTCGTGTCGATAT TTCACTCACCCCGATGGGGGATAGGATCACCATTTGCCGTAGAATCTACTGATCCAATGTTCAGGCATGCTAATCAATGGGGGAAAAAAGGCCACTGTTC CAGGGCAGTTGATCTGGGAGGTTGTCAAGAGGAACAACTGTTTCCTCGTAAAACAATTCGGCCGTGGCAATGCCGGTCTTCGTTTCAGCAACGAGAGCAA CAATCTCTACAACCTCAACTCCAACAAGTACTCTGGTTTGGCGAACAAGAAAACCGTTTCCATCCAGCCGGAAGGCAAGGATTTGAGTGTTGTACTGTCT ACCACCAAGACCAAGAAGCAGAACAAGCCTCCAATTTGAAGAACAAGTCAGTGATGAGGAAAGAGTTCCACTCCATGGCTAAGGCCGTTGCTAATCAAGT AATTTTCGATGGAACTCTTTTTGGTGAATCTGCTTAA
AA sequence Show only first row Show all	>Lus10032698 pacid=23159037 polypeptide=Lus10032698 locus=Lus10032698.g ID=Lus10032698.BGIv1.0 annot-version=v1.0 MPAAGAADSTTPGGAGSSLYSSTNHSLQILVSIFHSPRWGIGSPFAVESTDPMFRHANQWGKKGHCSRAVDLGGCQEEQLFPRKTIRPWQCRSSFQQREQ QSLQPQLQQVLWFGEQENRFHPAGRQGFECCTVYHQDQEAEQASNLKNKSVMRKEFHSMAKAVANQVIFDGTLFGESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032698 [exp]	0	1
AT5G18540			unknown protein		Lus10002878 [exp]	1.0	0.9059
AT2G45520			unknown protein		Lus10015859 [exp]	4.9	0.8764
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	4.9	0.8566
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	8.5	0.8424
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	10.0	0.8156
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	12.7	0.8653
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	14.1	0.8615
AT1G53200			unknown protein		Lus10030239 [exp]	14.7	0.8412
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	15.0	0.8575
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	15.8	0.8391

Compare expression of checked genes

Lus10032698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.