Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29410 162 / 4e-52 Ribosomal L28e protein family (.1.2) AT2G19730 155 / 2e-49 Ribosomal L28e protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012914 [exp] 220 / 4e-75 AT4G29410 224 / 7e-77 Ribosomal L28e protein family (.1.2) Lus10012915 [exp] 218 / 3e-74 AT4G29410 224 / 1e-76 Ribosomal L28e protein family (.1.2) Lus10006869 [exp] 158 / 2e-50 AT2G19730 218 / 3e-74 Ribosomal L28e protein family (.1.2.3) Lus10037609 [exp] 156 / 8e-50 AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3) Lus10032698 [exp] 122 / 1e-35 ND 134 / 1e-40
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045500 [exp] 166 / 7e-54 AT2G19730 230 / 3e-79 Ribosomal L28e protein family (.1.2.3) Potri.001G194000 [exp] 164 / 4e-53 AT2G19730 227 / 1e-77 Ribosomal L28e protein family (.1.2.3) Potri.006G212501 [exp] 45 / 4e-07 AT4G29410 45 / 2e-07 Ribosomal L28e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [flax] [poplar] Ribosomal_L28e Ribosomal L28e protein family
Representative CDS sequence Show only first row Show all	>Lus10032699 pacid=23158955 polypeptide=Lus10032699 locus=Lus10032699.g ID=Lus10032699.BGIv1.0 annot-version=v1.0 ATGGCCACAGTTCCAGGGCAGTTGATCTGGGAGGTTGTCAAGAGGAACAACTGCTTCCTCGTGAAGCAATTCGGCCGTGGCAATGCCGGTCCCCGGGTCA GCAAGGAGAGCAACAATCTATACAACCTCAACTCCTACAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTTCTATCCAGCCGGAAGGCAAGGATTTGAG TGTTGTACTGTCTACAACCAAGACCAAGAAGCAGAACAAGCCTGCCGATTTGAAGAACAAGTCAGTGATGAGGAAGGAGTTCCACTCTATGGCTAAGGCC GTTGCTAATCAAGTTGGAGACAACTATTACCGGGCTGATCTGAAGAAGGCAGCCCTTGCTAGACTCAGTGTTGTCCACAAGAGCCTTAAGGTTGCCAAGT CGGGCCCCAAGAGGAGAACTAGGCAGGGGAGGAAGTGA
AA sequence Show only first row Show all	>Lus10032699 pacid=23158955 polypeptide=Lus10032699 locus=Lus10032699.g ID=Lus10032699.BGIv1.0 annot-version=v1.0 MATVPGQLIWEVVKRNNCFLVKQFGRGNAGPRVSKESNNLYNLNSYKYSGLANKKTVSIQPEGKDLSVVLSTTKTKKQNKPADLKNKSVMRKEFHSMAKA VANQVGDNYYRADLKKAALARLSVVHKSLKVAKSGPKRRTRQGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29410			Ribosomal L28e protein family ...		Lus10032699 [exp]	0	1
AT4G18100			Ribosomal protein L32e (.1)		Lus10009591 [exp]	2.2	0.9712
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	2.4	0.9646
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Lus10008873 [exp]	2.8	0.9703
AT5G59850			Ribosomal protein S8 family pr...		Lus10029461 [exp]	3.5	0.9591
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031979 [exp]	3.5	0.9627
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	3.9	0.9614
AT5G59850			Ribosomal protein S8 family pr...		Lus10005960 [exp]	4.2	0.9537
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	9.2	0.9466
AT1G22780		RPS18A, PFL1, P...	40S RIBOSOMAL PROTEIN S18, POI...		Lus10042603 [exp]	9.4	0.9534
AT5G27700			Ribosomal protein S21e (.1)		Lus10015173 [exp]	9.4	0.9545

Compare expression of checked genes

Lus10032699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.