Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56740 322 / 3e-107 HAG02, HAC7, HAC07, HAG2 histone acetyltransferase of the GNAT family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012916 [exp] 525 / 0 AT5G56740 537 / 0.0 histone acetyltransferase of the GNAT family 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068200 [exp] 379 / 7e-130 AT5G56740 541 / 0.0 histone acetyltransferase of the GNAT family 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032700 pacid=23159014 polypeptide=Lus10032700 locus=Lus10032700.g ID=Lus10032700.BGIv1.0 annot-version=v1.0 ATGTTGTCCGTAATTCCTCCTCTCATCGTGTCCCTTTTGATACCAATCCCACCTTTCCATCCGGAACAGCCTACTAGCCCATCGCCGAATACGCCCTATC AGTTGCGCACCACCCAGAACATCTTTGGTGAGACTCTTGTTGACAGCAAGGAAGACTTCCTTCAGACCTTTTCGTCGGATAGTAACTATATCAGTATGCT ACTATGTCAGGTTGTGCGGATGGTGATGGGAAATCCCGATGCTGGACAACTCTACAGTCGTGTGGTTCCCCTTGTTCTTTTACTAGTTGATGGTAGCAAT CCCATTGATGTTACTGACCCAGGATGGGAGCTTTATGTTCTAATTCAAAAGAAGGATCAGGAGAATACCCAACTTGTACTACTGGGATTTTCTGCTGTGT GTCGCTACTATCACTATCCCGACAGCACTCGACTGCGCCTAGACCAGATTTTGGTGTTGCCGTGTTACCGAGGTAAGGGCTATGGACGTCACCTTATCGA GACGATTCACAATGTTGCAATAGCCGAAGATGTTTACGACTTCACATTGGAAGAGCCATTGGATACTTTCCAACATGTCTGCACCTGTGTCGATGTGCAA AGGCTGCTCGGGTTTGAATTGATTCAGGAAGCGATCAGGTCAGCTATTTCATATCTGAAACATGGGAAACTGTCGAAGAAAGCTCAAGTTCCTCAATTTG TGCCGCCTTCAAGTGCTGTCGAGGACGTCAGAAAGACTCAGTTAACTCAGTGTTGGGAGATACTAGTTTATCTCAAGCTCGAGGCAGTGGAGAAGTACAT GGAGGATTTTGCGATGATAATTTCGAATCGGGTTAAAGAAGACATTTTAGGGAAAGATAATAACGGGAGTGGCGGGAAGCAAGTGATCGAAGTTGAAAGT GAATTCAATCCGGATGTGTCGTTTGTGATGGTGAAGACAAAAGACGGAAAACCAAATGCAGTTGAGATGGACGAGGACCAAAATAACCAACAACAGGAGC AGTTGAAGCAACTGGTTGATGAGCGGCTGAACGAGACTTATTAA
AA sequence Show only first row Show all	>Lus10032700 pacid=23159014 polypeptide=Lus10032700 locus=Lus10032700.g ID=Lus10032700.BGIv1.0 annot-version=v1.0 MLSVIPPLIVSLLIPIPPFHPEQPTSPSPNTPYQLRTTQNIFGETLVDSKEDFLQTFSSDSNYISMLLCQVVRMVMGNPDAGQLYSRVVPLVLLLVDGSN PIDVTDPGWELYVLIQKKDQENTQLVLLGFSAVCRYYHYPDSTRLRLDQILVLPCYRGKGYGRHLIETIHNVAIAEDVYDFTLEEPLDTFQHVCTCVDVQ RLLGFELIQEAIRSAISYLKHGKLSKKAQVPQFVPPSSAVEDVRKTQLTQCWEILVYLKLEAVEKYMEDFAMIISNRVKEDILGKDNNGSGGKQVIEVES EFNPDVSFVMVKTKDGKPNAVEMDEDQNNQQQEQLKQLVDERLNETY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	0	1
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	2.6	0.7653
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	3.7	0.6901
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	8.8	0.7428
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	10.7	0.7265
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10011649 [exp]	11.0	0.6554
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	12.3	0.7042
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	12.7	0.6909
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	17.3	0.6940
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	20.4	0.6530
AT4G39530			Tetratricopeptide repeat (TPR)...		Lus10014452 [exp]	29.7	0.6528

Compare expression of checked genes

Lus10032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.