Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29400 285 / 5e-96 Protein of unknown function (DUF3531) (.1) AT5G08400 159 / 6e-47 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009625 [exp] 160 / 3e-47 AT5G08400 409 / 6e-145 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) Lus10032811 [exp] 106 / 6e-28 ND 37 / 0.005 Lus10012917 [exp] 99 / 5e-26 AT4G29400 91 / 1e-23 Protein of unknown function (DUF3531) (.1) Lus10008997 [exp] 66 / 2e-13 AT5G08400 111 / 3e-31 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148300 [exp] 314 / 1e-107 AT4G29400 337 / 1e-116 Protein of unknown function (DUF3531) (.1) Potri.010G255300 [exp] 162 / 5e-48 AT5G08400 438 / 4e-156 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12049 [flax] [poplar] DUF3531 Protein of unknown function (DUF3531)
Representative CDS sequence Show only first row Show all	>Lus10032701 pacid=23158939 polypeptide=Lus10032701 locus=Lus10032701.g ID=Lus10032701.BGIv1.0 annot-version=v1.0 ATGTTTACCGCAGGCCAGTGCTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTGCTATAATCTTCACGCATTCCCTCAATTGTCCACTTCCCCCTTCCCAC CAATCGCCGTTGCTGCGGCCAGACGAAACCATGCTCCACCACCACGCGGCATAACAGCTACTAAACTCTCCGTTACGAAACGGAATCAGACAGTGAGCAA AGAAGATGCCGTGAAAGAGGTAGACGGAGTTGGCGTAGATGGAGAGGAGGGAGATGAATTCCTGGAGGCGGCGGAAGGGTTTAGGGTGATGGGGTTGGAA GACGAGAAGGGTTACGACAGAGACCCTGAACTTGCTGAGATTATGGGCAGCTGTCTCGTTGACCCTGAAAAGGCTCAGTCAAAGATGGAGGAGAGAATGA GGAGAAAAAGGAACAAGATTCTTCATAATAAGACCGGTTCGTCAACGCCGATGAAAGTTAGTTTCAACAAGTTTGACTTCACAAATGCATACATATGGTT TGAATTCTACAATGTTCCATTGGAGCAAGATGTTTCCTTAATCTGTGATACACTTCGGTCATGGCACATCATCGGGCGTCTTGGTGGATGCAACTCCATG AATATGCAGCTATCACAATCAGGGTTGGGAAAGAACCCAAAGTACGATCATATTCAGGGAGCAAACGTGACACCTACCACATTTTACAACATTGGTGATT TTGAGTTGCAAGATAACTTGGGCCGGATATGGGTAGATATTGGGACTGTTGAACCATTGATCCTGGATGTGTTGATAAATGGACTGATCCAGATAAGCTC AGATAATGTTGGGATCAAGCAATTGGTTTTTGGTGGGTCTGAATTTCAGAACTGGAAGGATAATTTCACGTCAGAAGAGGAAGGTTGCAGTTTCCGCAAG ATTTAG
AA sequence Show only first row Show all	>Lus10032701 pacid=23158939 polypeptide=Lus10032701 locus=Lus10032701.g ID=Lus10032701.BGIv1.0 annot-version=v1.0 MFTAGQCSFSSSSSSSSCYNLHAFPQLSTSPFPPIAVAAARRNHAPPPRGITATKLSVTKRNQTVSKEDAVKEVDGVGVDGEEGDEFLEAAEGFRVMGLE DEKGYDRDPELAEIMGSCLVDPEKAQSKMEERMRRKRNKILHNKTGSSTPMKVSFNKFDFTNAYIWFEFYNVPLEQDVSLICDTLRSWHIIGRLGGCNSM NMQLSQSGLGKNPKYDHIQGANVTPTTFYNIGDFELQDNLGRIWVDIGTVEPLILDVLINGLIQISSDNVGIKQLVFGGSEFQNWKDNFTSEEEGCSFRK I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	0	1
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	2.8	0.9114
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	6.5	0.8994
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	9.2	0.8722
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	9.6	0.8900
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Lus10014051 [exp]	11.2	0.8574
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	13.0	0.8852
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	13.4	0.8455
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	16.6	0.8766
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	18.2	0.8666
AT3G25660			Amidase family protein (.1)		Lus10020781 [exp]	19.1	0.8618

Compare expression of checked genes

Lus10032701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.