Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26240 101 / 1e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012919 [exp] 169 / 2e-54 AT4G26240 246 / 7e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153800 [exp] 119 / 8e-35 AT4G26240 254 / 7e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032703 pacid=23159015 polypeptide=Lus10032703 locus=Lus10032703.g ID=Lus10032703.BGIv1.0 annot-version=v1.0 ATGAAGAAGTTGGCAAGAAGTTCGCGGAAATCTTGCGACAACGATGAATTATCTCTTCCAACCCATGAAGATCCCGATGACTCTCGCTCCGTGGATCCCC AAGAGCAAGAAGAACTAGTTCGGTCCCTTGGAAGCGCACAAGCTCAGCAATCTCTGCTTTGGACGAGAGTGTTCGCTGGGATTCTCCTCTGCTATGCTGC CTTCCTAGTGTATTCAATCTACCAGCAACTCGGTTCTCCCTGGGAACTGCGCTATCATGCTTACTTCATGGATTGTAATTTCTGCAGTGCGTCTTCTGTT TGCCTTTACGTTGATCACTTGCTCACCGAGTCATCAGAAGAGGTGAAGAAACTCGGAAGCTATATGTATTCCTACAAAGCCACATAG
AA sequence Show only first row Show all	>Lus10032703 pacid=23159015 polypeptide=Lus10032703 locus=Lus10032703.g ID=Lus10032703.BGIv1.0 annot-version=v1.0 MKKLARSSRKSCDNDELSLPTHEDPDDSRSVDPQEQEELVRSLGSAQAQQSLLWTRVFAGILLCYAAFLVYSIYQQLGSPWELRYHAYFMDCNFCSASSV CLYVDHLLTESSEEVKKLGSYMYSYKAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26240			unknown protein		Lus10032703 [exp]	0	1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	8.8	0.8767
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	10.0	0.8835
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	11.3	0.8711
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	11.3	0.8540
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	12.2	0.8674
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	14.1	0.8535
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	14.3	0.8673
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	15.6	0.8750
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	15.9	0.8524
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	17.5	0.8536

Compare expression of checked genes

Lus10032703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.