Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) AT4G17486 226 / 1e-74 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 225 / 2e-74 PPPDE putative thiol peptidase family protein (.1) AT5G47310 225 / 4e-74 PPPDE putative thiol peptidase family protein (.1) AT1G80690 221 / 2e-72 PPPDE putative thiol peptidase family protein (.1) AT2G25190 220 / 5e-72 PPPDE putative thiol peptidase family protein (.1) AT4G31980 203 / 5e-61 unknown protein AT4G25680 77 / 8e-17 PPPDE putative thiol peptidase family protein (.1) AT4G25660 76 / 2e-16 PPPDE putative thiol peptidase family protein (.1) AT3G07090 58 / 8e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003951 [exp] 490 / 2e-178 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10040485 [exp] 280 / 2e-95 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10011291 [exp] 275 / 2e-93 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 233 / 1e-77 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 230 / 2e-76 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 229 / 6e-76 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 225 / 2e-74 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 222 / 3e-73 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10039492 [exp] 216 / 3e-71 AT1G47740 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134200 [exp] 397 / 6e-142 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 394 / 1e-140 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 344 / 8e-121 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 343 / 3e-120 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 334 / 5e-117 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 235 / 5e-78 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 230 / 4e-76 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 230 / 6e-76 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 229 / 7e-76 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 220 / 3e-72 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10032708 pacid=23158964 polypeptide=Lus10032708 locus=Lus10032708.g ID=Lus10032708.BGIv1.0 annot-version=v1.0 ATGAAACTGGAGTCGAAGAAAGGATGGAAAGCAATGATGCCCCTTAGGCTGAGGAGTAAAACGGGCACAGGTACACGTTTTTGTTTGTTCCCAAAACAAA GGACAGTTGGGTATGGTCCAGACAAAGCACCAGTCTATCTCAATGTCTATGACTTGACACCCATGAATGGCTATGTCTATTGGGCTGGTCTTGGCATCTT TCACTCCGGTGTCCAAGTTCATGGGGTAGAGTATGCATTCGGAGCGCATGACTACCCGACGAGTGGGGTATTCGAGGTTGAGCCAAGGCAGTGTCCTGGC TTTAAGTTCAGAAGGTCTATATTTGTAGGAACCACGTCCATGGATCCCAATCAGGTTAGGGAGTTTATGGAGCAGCACGCAGCGAGCTACCATGGCGATA CCTACCACTTAATTGTTAAGAATTGCAATCATTTTTGCACGGATGTTTGTCGCAAGATCACGGGTAGACCGATTCCAAAATGGGTTAATCGACTTGCACA AATAGGATCAGTATGCAACTGCATACTTCCAGAGTCTCTCAAGATAACAGCGGATCCAAATGGAGAAGCATACGACAGTGAAAAGACAAGGCTGAGAAGT GCATTCAGTTGCTTGTCTTCAATCTCAATGAGACAGAAGCAGCTATCGACGTCCTCATTAATCCTACAGTCGCCACTGAGAGGTTGCCTACCGTGGGAAT TCAAGAGGTCAATCAGCAGTTCGCTCAAGGAGAGATGA
AA sequence Show only first row Show all	>Lus10032708 pacid=23158964 polypeptide=Lus10032708 locus=Lus10032708.g ID=Lus10032708.BGIv1.0 annot-version=v1.0 MKLESKKGWKAMMPLRLRSKTGTGTRFCLFPKQRTVGYGPDKAPVYLNVYDLTPMNGYVYWAGLGIFHSGVQVHGVEYAFGAHDYPTSGVFEVEPRQCPG FKFRRSIFVGTTSMDPNQVREFMEQHAASYHGDTYHLIVKNCNHFCTDVCRKITGRPIPKWVNRLAQIGSVCNCILPESLKITADPNGEAYDSEKTRLRS AFSCLSSISMRQKQLSTSSLILQSPLRGCLPWEFKRSISSSLKER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	0	1
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	2.0	0.8759
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	6.3	0.8451
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	6.5	0.8208
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10028993 [exp]	7.5	0.8435
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	8.9	0.8274
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	11.8	0.8407
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	12.2	0.8222
AT1G73940			unknown protein		Lus10010150 [exp]	12.5	0.8056
					Lus10018607 [exp]	16.6	0.7743
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	17.4	0.8014

Compare expression of checked genes

Lus10032708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.