Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75100 166 / 8e-44 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT4G12770 131 / 2e-31 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 127 / 2e-30 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36520 127 / 5e-30 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 124 / 4e-29 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G21660 117 / 1e-27 Chaperone DnaJ-domain superfamily protein (.1) AT1G30280 104 / 1e-23 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018811 [exp] 784 / 0 AT1G75100 183 / 3e-50 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10018854 [exp] 130 / 2e-31 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 128 / 7e-31 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10012302 [exp] 129 / 1e-30 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10041769 [exp] 129 / 1e-30 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10016079 [exp] 126 / 6e-30 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 125 / 1e-29 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012303 [exp] 125 / 1e-29 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10033205 [exp] 105 / 3e-23 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042600 [exp] 204 / 8e-57 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 199 / 1e-54 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.014G197600 [exp] 132 / 5e-32 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.007G022600 [exp] 128 / 2e-30 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 126 / 7e-30 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 125 / 1e-29 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 123 / 1e-29 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 120 / 1e-28 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 112 / 4e-26 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 113 / 9e-26 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032709 pacid=23158979 polypeptide=Lus10032709 locus=Lus10032709.g ID=Lus10032709.BGIv1.0 annot-version=v1.0 ATGAACTCATTTGTTCCACAAATAAACTCTACAACAACGAAATCAAAGATAGGTCGTCAATTGAATAGCCTAAAACTGCTAGGAATGTGCGGAGTCCTTG CGTCCCTAACAGATAGCAGAGTTGCAGAAGCAACTATTACTGGAGCTATATCCTTGCTTGAATTCATTGATTCCTTAATTTCGTGTTTTTCACCAAGAAC TGGAAAGCTCACAACTTTGAAAAGAGAGAAAGCGTACTTAGTCCACAGAGGTCCCCCATTGTTGTTTCTCCGGCAGCGAAGAGCCCCTGCCGAGACTCCA ACTCCGACATCGATTTCAACGACGTCTTCGGCGGCCCGCTTCGGCGGCCCGCCACGGAGAGCGTCGTTACAGAACGCCCGTCACAGTTTTGGGGAGGATC CGTTCGGAGGCGATGAGGACACGATACAGTCTTCTTCGTCGAGGAATCGATGGTCTGGGTTGTACGAGAAGCCCGTTTTTGGTGAGCACGAAGGAGGGAC CAGCAACAGAGGACGGCGTCAGGCCGGAGATTTCTTCGACGACATATTTGGCGGGAACGATTCTTTGGGTCATTCTCCCCCCAGGCGGATTTTCAGCGGT TCTCCGGCCAGTTCCAGAGTTTTGAGTCCGGCCAGAGCTGATACGCCAGCAAGTTCTTCACTTCCTTCTCCATTCAGTTTACCTTCCAAGCTAACCAAAT GGAGTGATCTGCCGACATTTGGTTCGAGTCCTCGCAAATATTCATTTTCTCCGTTGTCGAGATCCTCGAGCAAACAAGATTTGGCCGAAACCGAAGGGGA TGAGTTGTCCAAAAACATGGCTAAGCACCATCATCCTGATGTAACGTTTCAGAATCTGAAAGGAGGAGATTCCACGAGTTCCTCACAAGTACTTGGAAGC AATGGTGGCCATTTCCACTTCTCTATCTACAAATGGGCGAGTCAAGGAGCTCCTCCTCCTATGTCTACGCCTCTCAGGGGAGGTTCGAAATCGAGAGATA AGTTCACATCATCATCAGCAAGTGAAGTTTCAGAGCCAAGTAAAAAGGGAACTGGTGAGAGAGCAAGAGAAAAGGAGTTGAGAGAGATCAAACTTAAGAC CTCCAACAAGGCTGAAAAACCTGCAGAAGTTGAGGAAACCCAGAGGAAGAGTAAAGCTAAGGGGAAGGTGAAGGATTTTGTTAATATATTCAACCAGGAG GCCAAACCTGATGTCAAAGATCAAAGGCAAAGAAGCAAGTCTGGGAAGAAGGATAGGAGAAATTCCAGAGCAATGGATGGCACTAAATTGGTTGATCAGA AAACCAAGTTTGCTCGTGAGAACAGCGACTCTAATCTGGAGGCATCATATGTCCAGGTTGAAAAGACTGAGAAACAACCAGCCGAGGAGAGAAGTGAGAG TCACCGAACTTCTGAAGCTCCGGATACATCAGTAGCAGTAGCACCAGCAGAAGTGTCTGATGCTTCAGAAGCAACACTTGGAGATCAAGATGAACCCTTC CAGGTCAGAGAATTACCACAACAGACAGAAGACGGGAAGCAATTACCAACTGGGGACAATAGTGAACAACTCCAGGCGAATGATGCCAAGATAAGGAAAT GGTGCCAAGGGAAGGAAGGAAACATACGTTCCCTGCTCTCAACACTGCAATATATTCTATGGGCGGAAAGCGGGTGGAAGCCAGTGCCTTTAGTGGATAT AATAGAAGGGAATGCAGTTAAAAGAACATATCAAAGAGCCTTACTGTGTCTACACCCAGACAAGCTGCAACAGAAGGGTGCTACCGGAGAACAGAAGTTC ATCGCTGAAAAAGTTTTCGATATCTTGCAGGTCGGATTTTGTTATCCCTTTTTAGTATCAGAGTATCAACTGTTAGCTACGTTAAAAATATAA
AA sequence Show only first row Show all	>Lus10032709 pacid=23158979 polypeptide=Lus10032709 locus=Lus10032709.g ID=Lus10032709.BGIv1.0 annot-version=v1.0 MNSFVPQINSTTTKSKIGRQLNSLKLLGMCGVLASLTDSRVAEATITGAISLLEFIDSLISCFSPRTGKLTTLKREKAYLVHRGPPLLFLRQRRAPAETP TPTSISTTSSAARFGGPPRRASLQNARHSFGEDPFGGDEDTIQSSSSRNRWSGLYEKPVFGEHEGGTSNRGRRQAGDFFDDIFGGNDSLGHSPPRRIFSG SPASSRVLSPARADTPASSSLPSPFSLPSKLTKWSDLPTFGSSPRKYSFSPLSRSSSKQDLAETEGDELSKNMAKHHHPDVTFQNLKGGDSTSSSQVLGS NGGHFHFSIYKWASQGAPPPMSTPLRGGSKSRDKFTSSSASEVSEPSKKGTGERAREKELREIKLKTSNKAEKPAEVEETQRKSKAKGKVKDFVNIFNQE AKPDVKDQRQRSKSGKKDRRNSRAMDGTKLVDQKTKFARENSDSNLEASYVQVEKTEKQPAEERSESHRTSEAPDTSVAVAPAEVSDASEATLGDQDEPF QVRELPQQTEDGKQLPTGDNSEQLQANDAKIRKWCQGKEGNIRSLLSTLQYILWAESGWKPVPLVDIIEGNAVKRTYQRALLCLHPDKLQQKGATGEQKF IAEKVFDILQVGFCYPFLVSEYQLLATLKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	2.0	0.8656
AT3G15760			unknown protein		Lus10005715 [exp]	5.5	0.8681
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	8.5	0.8447
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	10.2	0.8792
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	14.8	0.8683
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	16.8	0.7698
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10040482 [exp]	21.1	0.8201
AT3G56290			unknown protein		Lus10029051 [exp]	23.9	0.8652
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	25.3	0.8650
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	25.8	0.8132

Compare expression of checked genes

Lus10032709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.