Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19360 604 / 0 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 586 / 0 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 490 / 4e-173 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 65 / 5e-11 XEG113 xyloglucanase 113 (.1) AT1G70630 62 / 5e-10 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01750 53 / 2e-07 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G01770 51 / 8e-07 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT4G01220 49 / 3e-06 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G19970 45 / 9e-05 unknown protein AT1G56550 44 / 0.0002 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018812 [exp] 818 / 0 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10026327 [exp] 597 / 0 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 592 / 0 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 66 / 1e-11 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 60 / 3e-09 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10027804 [exp] 55 / 8e-08 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10005034 [exp] 52 / 7e-07 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10017981 [exp] 49 / 4e-06 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 49 / 6e-06 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134400 [exp] 688 / 0 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 681 / 0 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.009G113300 [exp] 617 / 0 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 59 / 4e-09 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 54 / 2e-07 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.002G166000 [exp] 50 / 2e-06 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G092400 [exp] 44 / 0.0001 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.010G099400 [exp] 42 / 0.0006 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10032710 pacid=23158942 polypeptide=Lus10032710 locus=Lus10032710.g ID=Lus10032710.BGIv1.0 annot-version=v1.0 ATGGCGGGGCGTAGAGACAAACCCCCGACGTTTCGCCGATCTCCCCTCCTCGTAGCCATTGTCGTCGGAATTCTTCTTGGTTGCCTTTTCGCTCTCATGT ATCCTCATGGCTTTTTCACCTACGATCCGGCACTTAATCAGATTGATAAGTCAGATCTCCAGGTTGGCTCATCATGTGAATCACCAGAAAGGATTAGGGT GCTTAAATCAGATATTGTCTCCCTTACGGAGAGCATTGCACGGTTGAAGAAGCAAGCCAGGGAGCTAAATCAAAAGCTGCAAATGGCTGACCAGGAAGAA GACCATGCACAGAAGCAGGTTTTGCGGTTAGGTAAACAGCAGAAAGCGGGGCCTTTTGGTACCGTCAAGGGTTTGAGAACCAACCCAACTGTCGTTCCTG ATGAATCTGTTAATCCAAGGCTTGCAAAACTGTTGGGAGAAATTGCTCTTGGGAAGGAGGTCATTGTTGCTCTCGCAAACTCGAATGTACAAGAATCGTT AGAGGTTTGGTTCACTAACATTAAAAGGGTCGGTATTAAAAATTACGTGGTTGTAGCCTTAGATGATCACATTGCAGATTTCTGCAAGTCCAGTGATGTT CCAGTGTATACGAGAGATCCAGATGATGGTGTCGATTCAGTAGCGAAAACAGGAGGCAACCATGCCGTCTCTGGGTTAAAGTTCCGTGTTTTGAGGGAGT TTCTGCAGCTGGGATACAGCGTCCTCCTCTCGGATATCGACATTGTATTTCTGCAGAACCCATTTCATCATTTGTATAGAGATTGTGACGTCGAATCCAT GACTGATGGTCACAATAACATGACAGCCTATGGTTTCAACGATGTATTTGATGAACCAGCCATGGGATGGGCTCGTTATGCACACACAATGAGGATCTGG GTTTACAACTCTGGCTTCTTTTACATAAGACCGACGCTCCCTGCAATTGAGCTTTTGGATCGTGTGGCTGGTAGACTATCAAGAGAGCCAAACTCATGGG ATCAAGCAGTTTTCAATGAGGAACTTTCCTACCCATCCCACCCTGGATATGAAGGTCTTCATGCTGCAAGAAGAACCATGGATTACTATCTATTTATGAA CAGTAAAGTACTTTTCAAGACTGTCAGGAAAGATGCTAACCTAAAGAAGCTGAAGCCAGTGATTGTTCACCTAAATTATCACCCAGACAAGCTACCAAGA ATGAAAGCTGTGGTACAGTACTACGTCAACGGCGAGCAGGATGCGCTCGATCCCTTCCCTGATGGTTCTGACTGGTAG
AA sequence Show only first row Show all	>Lus10032710 pacid=23158942 polypeptide=Lus10032710 locus=Lus10032710.g ID=Lus10032710.BGIv1.0 annot-version=v1.0 MAGRRDKPPTFRRSPLLVAIVVGILLGCLFALMYPHGFFTYDPALNQIDKSDLQVGSSCESPERIRVLKSDIVSLTESIARLKKQARELNQKLQMADQEE DHAQKQVLRLGKQQKAGPFGTVKGLRTNPTVVPDESVNPRLAKLLGEIALGKEVIVALANSNVQESLEVWFTNIKRVGIKNYVVVALDDHIADFCKSSDV PVYTRDPDDGVDSVAKTGGNHAVSGLKFRVLREFLQLGYSVLLSDIDIVFLQNPFHHLYRDCDVESMTDGHNNMTAYGFNDVFDEPAMGWARYAHTMRIW VYNSGFFYIRPTLPAIELLDRVAGRLSREPNSWDQAVFNEELSYPSHPGYEGLHAARRTMDYYLFMNSKVLFKTVRKDANLKKLKPVIVHLNYHPDKLPR MKAVVQYYVNGEQDALDPFPDGSDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	0	1
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	1.0	0.9584
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	3.3	0.8595
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	6.3	0.8863
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	7.7	0.8908
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	7.7	0.8939
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	8.7	0.8453
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	10.2	0.8706
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	12.7	0.8911
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	18.7	0.8362
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	19.1	0.8827

Compare expression of checked genes

Lus10032710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.