Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75210 899 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT5G48960 219 / 5e-63 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT2G23890 163 / 2e-43 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019962 [exp] 160 / 4e-41 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10015485 [exp] 130 / 2e-31 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G196700 [exp] 879 / 0 AT1G75210 869 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.008G205900 [exp] 225 / 3e-65 AT5G48960 910 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.010G002900 [exp] 222 / 3e-64 AT5G48960 902 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.018G100600 [exp] 164 / 1e-43 AT2G23890 871 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF05761 [flax] [poplar] 5_nucleotid 5' nucleotidase family
Representative CDS sequence Show only first row Show all	>Lus10032712 pacid=23159042 polypeptide=Lus10032712 locus=Lus10032712.g ID=Lus10032712.BGIv1.0 annot-version=v1.0 ATGCGCTTCCCCAGGAACCCCGCCGTCTCCTTTTGCCTCTCTCTTCTCTTCTCTCCCGATATCGCCCGTCCATCTTCTTCCTTCTTCTCTTCTTCCTCTC GGACCACCATTAACACCTCTGCTGGAATCGGCCGTCGGTATTCTCTCGCCAGGAGGAAATCGTTTCATACCTCAGGAATCATTCTGCCTCACGCAAACTA CACCATGGATGAGGTTCACAGGACTGCTATAGGTGATGATGAAATGTCGAGAGGACCACATATATGGGCGTCTCCTGAAGGAGGTCGTGATATCCAGATT GGAAAGCAGATATTTTGCAACAGATCATTGAATATGAGGAACATCGTGGCTGTTGGTTTTGATATGGATTACACTTTGGCACAATACAAACCTGAAACCT TTGAGTCGCTTGCATATGAAGGCACAATCAGAAAGTTGGTCTATGATCTTGGGTATCCTCTAGAGCTGTTACATTGGAAGTTTGATTGGACATACATGGT TAGAGGCTTGGTTCTTGATAAGAAGAGAGGCAACATCTTGAAAATGGATCGTCACAAGTACGTTAAAGTTGCCTATCATGGATTTCGAGAGATGTCCAAG GAAGAAAAAGTTGGCACATATGGGAGTACTTTGATACGAGATTCTTTTGATGAGCCAGACTATGCACTGATTGATACTCTCTTTTCCTTAGCTGAAGCCT ACTTGTTTGCTCAGCTTGTTGGCCTGAAGGACAAAAATCCAGAGAAAGTTCCTCAAGCAGCCGATTATGCTCGTATGTATAAAGATGTTCGAGCTGCTGT TGATTTGTGTCATCGTGATGGAACATTGAAGCAAATGGTTGCAAAAGATCCAGAAAGATACATCAATGAGGATACAACCATTGTTCCAATGCTCAAGATG CTTAAACATTCAGGACGTGCTACATTCTTGGTGACAAATAGCCTTTGGGACTACACAAACATTGTAATGAATTTTCTTTGTGGAGGTCGTACAATGCATG GTAGTCGTCCTTGCAACTTTGAGTGGCTCCAATACTTCGATGTTGTTGTCACTGGCAGCGCAAAACCAGGATTTTTCCATGAGGATAATCGTGCTGGTCT TTTTGAAGTTGAACCTGAAAGCGGTATGCTACTTAACACTGATAATGGAACTCCTATGCCGCAGGTAGGAGACGTGGTACCAAAGATAATGCTGAAGGAA AACCTAAGTAAGCCATGCAGAGTCTTCCAGGGAGGAAGTGTTGGCCATCTTCACAAATTGCTATCAATTGAATCCAGTTCTCAGGTTCTTTATGTTGGAG ATCATATCTATGGAGATATTCTTCGCAGCAAAAAGGTTTTAGGTTGGAGAACGATGCTTGTGGTTCCTGAGCTGGAGAGGGAAGTCGACATTCTATGGCA AATACGGGATACACGCAAGCAACTTAGGTTGTTAAGGAATGAACGCGATCGTATCGAAGATGAAGTACATCATATAAAATGGTCTCTCAAGTTTGAGAAT TTAGATGCTGATAGAAAAAAGAAACTAGTCGGTGCTCTTGATCAATTTGAGGCTCAGGCGGATAAAGTAAGGATTACTCACCAACAGGCTCAACGGGAGT GTCATAAGAAGTTTCATAAAGTATGGGGACAGCTTATGAAGACTGGATATCAGAACTCTCGATTCGCTCATCAGGTTGAGAGATTCGCATGTCTGTACAC GAGCCAAGTATCAAATATAAGCTTGTATTCGCCCGACAGATACTACAGACCCAGTGAAGACTTCATGCCCCACGAGTTTGGTATTCTGCCCATTTGA
AA sequence Show only first row Show all	>Lus10032712 pacid=23159042 polypeptide=Lus10032712 locus=Lus10032712.g ID=Lus10032712.BGIv1.0 annot-version=v1.0 MRFPRNPAVSFCLSLLFSPDIARPSSSFFSSSSRTTINTSAGIGRRYSLARRKSFHTSGIILPHANYTMDEVHRTAIGDDEMSRGPHIWASPEGGRDIQI GKQIFCNRSLNMRNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYPLELLHWKFDWTYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSK EEKVGTYGSTLIRDSFDEPDYALIDTLFSLAEAYLFAQLVGLKDKNPEKVPQAADYARMYKDVRAAVDLCHRDGTLKQMVAKDPERYINEDTTIVPMLKM LKHSGRATFLVTNSLWDYTNIVMNFLCGGRTMHGSRPCNFEWLQYFDVVVTGSAKPGFFHEDNRAGLFEVEPESGMLLNTDNGTPMPQVGDVVPKIMLKE NLSKPCRVFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVDILWQIRDTRKQLRLLRNERDRIEDEVHHIKWSLKFEN LDADRKKKLVGALDQFEAQADKVRITHQQAQRECHKKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNISLYSPDRYYRPSEDFMPHEFGILPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	0	1
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	1.4	0.9209
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	4.9	0.8890
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	4.9	0.8775
AT5G47860			Protein of unknown function (D...		Lus10024193 [exp]	5.1	0.8663
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	6.9	0.8829
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	7.3	0.9091
AT4G17540			unknown protein		Lus10040155 [exp]	10.4	0.8655
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	10.8	0.8936
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	12.4	0.8778
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	14.0	0.8833

Compare expression of checked genes

Lus10032712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.