Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42760 467 / 2e-166 Leucine carboxyl methyltransferase (.1.2) AT4G02405 45 / 6e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000713 [exp] 665 / 0 AT5G42760 458 / 9e-163 Leucine carboxyl methyltransferase (.1.2) Lus10038881 [exp] 49 / 2e-06 AT4G02405 334 / 2e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10015003 [exp] 48 / 7e-06 AT4G02405 336 / 5e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260300 [exp] 542 / 0 AT5G42760 483 / 9e-173 Leucine carboxyl methyltransferase (.1.2) Potri.002G203900 [exp] 41 / 0.0008 AT4G02405 324 / 2e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04072 [flax] [poplar] LCM Leucine carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032713 pacid=23159018 polypeptide=Lus10032713 locus=Lus10032713.g ID=Lus10032713.BGIv1.0 annot-version=v1.0 ATGTCGAGCTTGGAAAGTGGCAACAAGTTTCAGGATGACTCACAGTGGTCGGAGGAGCTTAAGCTTTCCAAGTTGCTGAATACTCAGATGGTGAGGGAAC TCCATGTGGAGATCCAAACCCAGTGGGATCCTATACGGTTGTCCGCGTGCCAGACTGCAGCAGGAAGAGCGTTGTGGAGGCATGTGATCCATGACCCTTT GGCTGATTTGTTAGCTGGGGAGACTTACCTCAGGAGTCTCCATGAGAAGATTAAGAATGACCTCCTCAACAATGCCCGCGAAACTTCTGGTGTCATTCTC GCTGTCAGAACCCTCTGGTTCGATTCTAAAATTGACGCTGCTCTCACTTCCTTCCATGCTCAAACTCAGGTTGTTCTACTTGGTGCAGGTATGGATACAA GGGCGTACCGTCTAAGCAGCTTGAAGGAAACTGATGTCTTCGAGGTTGATTTCTCCGATGTCTTAGAAGTAAAAGCAACACTTCTAGAGGCAGCAACCAA GTCGATGAATGAACATAATCCACCAAGATTGACGGCAAAATCTCTCAACAGGGTAGCTGCAGACATTAGAAATAATGACTGGGTTGAAAAGCTCCAGAGA TCAGGTTTTGAACCAGAAAAGAAGACGGTATGGGTTCTAGAAGGCATTTTGTATTACCTCTCCCACGCGCAAGCCTTGCAAGTACTGAACACCATAGCTG ACAAGTGTTCCCTTGCCCACACCGTCCTTCTAGCAGATTTTATGAACAAACCCTCGACCACTATGTCCAGTTCTCTCTTCCACTTCTATAGTGATTGGCC TGACGATCTACTACCATCTCTCGGGTTCTCTGATGTAAAGCTGTCACAGATTGGCGATCCGGATGCTCATTTTGGGCTCATGGATGATCCATCAAATCTG TTCAACAAACTCCGCAGCTTGCCAAGGTCAGCACAAGTCCACCCAGATGATGGGACACCATGTTGTCGCTTGTATTTAGTAGAGGCTTCTGGCTTACCAA ATCATACCAACATATAG
AA sequence Show only first row Show all	>Lus10032713 pacid=23159018 polypeptide=Lus10032713 locus=Lus10032713.g ID=Lus10032713.BGIv1.0 annot-version=v1.0 MSSLESGNKFQDDSQWSEELKLSKLLNTQMVRELHVEIQTQWDPIRLSACQTAAGRALWRHVIHDPLADLLAGETYLRSLHEKIKNDLLNNARETSGVIL AVRTLWFDSKIDAALTSFHAQTQVVLLGAGMDTRAYRLSSLKETDVFEVDFSDVLEVKATLLEAATKSMNEHNPPRLTAKSLNRVAADIRNNDWVEKLQR SGFEPEKKTVWVLEGILYYLSHAQALQVLNTIADKCSLAHTVLLADFMNKPSTTMSSSLFHFYSDWPDDLLPSLGFSDVKLSQIGDPDAHFGLMDDPSNL FNKLRSLPRSAQVHPDDGTPCCRLYLVEASGLPNHTNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	0	1
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	1.4	0.9574
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	1.4	0.9627
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	3.9	0.9380
AT3G09050			unknown protein		Lus10035515 [exp]	6.5	0.9354
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	6.6	0.9233
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	7.1	0.9443
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	7.5	0.9330
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	7.5	0.9382
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	8.4	0.9186
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	8.4	0.9276

Compare expression of checked genes

Lus10032713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.