Plant FIBer expression Database

Lus10032714 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42765 219 / 7e-72 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G196800
[exp]
236 / 8e-79 AT5G42765 232 / 2e-77 unknown protein
PFAM info
Representative CDS sequence
>Lus10032714 pacid=23158936 polypeptide=Lus10032714 locus=Lus10032714.g ID=Lus10032714.BGIv1.0 annot-version=v1.0
ATGGCAGGAACCATACTCTCCTCCTCGGCACCCTCACTCCGGCTTGTACAGAGCTATAGCGGCGCCGGTTTTACCTGTAATTCCCAACTCGATGTAAGTT
CATCTCCGGTAGCCATCAAACTTCGCGGCGGCAGTCACCTTCCATTTCAGTTCAAGATCTCTCGCAGAGACGTTGCTTTACTCCCTTTCTTTGTACTCCC
GCCGCTCCTTTCGCAACCGCCTCCCGTCGCAGCTTTCTCCATCGGCATCTCAGGACCCAAGGACTGGCTGAAAGAGCAAAAGAGGAAGTCCTCACAGTTC
CTGCTGGCTCCCATTGATGCCTCCAAAGAAAGCCTTCACTACGCCTATCAATTACTCACAGCCAGATCTGATTTTACAGTAGTTGAATCAGAGGAAGTTC
AAAAGCTTTTGATATCTTCTGCTAGAGACTGCGTTCCAAAAGAGAGGAATTCGTTTGTCATGTTTCAGGCCAGCACTGGAGTTGAGGTTTGTACATTCAC
ATTGATTCTGAAGAATGCTGCTTCTTTGCTTGATAAGAAAGATCCTGTAAAGCTGCAGGCTGAAGCCATGTTGATTGATCTCATAAGATCCTTCACCTCT
CTGAGTGGCGTGGTTAACGGAATGGATATTCAACTCTCATCGGATAGACTGACGGTAGCTGATGCCGTCAAGAATACTCTGTCCTCACTAGACAAGTTTG
AGAAGGGTGTGAACGATTGTCTTGAAGCTTGA
AA sequence
>Lus10032714 pacid=23158936 polypeptide=Lus10032714 locus=Lus10032714.g ID=Lus10032714.BGIv1.0 annot-version=v1.0
MAGTILSSSAPSLRLVQSYSGAGFTCNSQLDVSSSPVAIKLRGGSHLPFQFKISRRDVALLPFFVLPPLLSQPPPVAAFSIGISGPKDWLKEQKRKSSQF
LLAPIDASKESLHYAYQLLTARSDFTVVESEEVQKLLISSARDCVPKERNSFVMFQASTGVEVCTFTLILKNAASLLDKKDPVKLQAEAMLIDLIRSFTS
LSGVVNGMDIQLSSDRLTVADAVKNTLSSLDKFEKGVNDCLEA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42765 unknown protein Lus10032714
[exp]
0 1
AT5G53490 Tetratricopeptide repeat (TPR)... Lus10007788
[exp]
2.2 0.9530
AT5G62960 unknown protein Lus10039964
[exp]
3.2 0.9416
AT1G01080 RNA-binding (RRM/RBD/RNP motif... Lus10030194
[exp]
3.9 0.9447
AT3G59780 Rhodanese/Cell cycle control p... Lus10025587
[exp]
4.5 0.9417
AT3G45050 unknown protein Lus10041331
[exp]
4.7 0.9484
AT5G44520 NagB/RpiA/CoA transferase-like... Lus10008059
[exp]
10.4 0.9376
AT3G25480 Rhodanese/Cell cycle control p... Lus10005853
[exp]
12.6 0.9299
AT3G06670 binding (.1.2) Lus10021547
[exp]
15.0 0.9356
AT5G67385 Phototropic-responsive NPH3 fa... Lus10019290
[exp]
15.3 0.9298
AT5G37360 unknown protein Lus10004762
[exp]
15.5 0.9329

Lus10032714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.