Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47330 595 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 418 / 3e-143 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 412 / 4e-141 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 406 / 2e-137 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 364 / 3e-121 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 362 / 3e-120 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT1G03270 348 / 7e-115 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G55930 57 / 3e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 56 / 4e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039289 [exp] 461 / 6e-159 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 459 / 3e-158 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 445 / 7e-154 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 385 / 9e-130 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 375 / 1e-125 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 363 / 1e-123 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 369 / 6e-123 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10028010 [exp] 357 / 4e-118 AT1G03270 635 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 357 / 4e-118 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G196900 [exp] 634 / 0 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 450 / 2e-154 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 437 / 1e-150 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 434 / 1e-149 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 410 / 4e-140 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G202100 [exp] 384 / 7e-129 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 380 / 3e-127 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 65 / 4e-13 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 54 / 2e-07 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032715 pacid=23158944 polypeptide=Lus10032715 locus=Lus10032715.g ID=Lus10032715.BGIv1.0 annot-version=v1.0 ATGGCCGACGATTTGCCCTGCTGTGGAACTCAATTCTCCCTCTATGTCCTCGCTATTATCGGACTTGTGGTCTTCGCCGGTCTCATGGCCGGCTTAACTC TCGGTCTCATGTCCCTTGGCCTCGTCGACCTCGAAGTCCTCATCAAGTCCGGCCGCCCTCAGGACCGTAAATATGCCGCCAAGATCTTCCCAGTGGTTAA AAATCAGCACCTTTTGCTGTGTACCCTCCTCATTGGCAATGCTCTTGCGATGGAGGCCCTGCCGATATGCTTGGACAAGCTCGCCCCTCCATACATTGCA GTTTTGGTGTCAGTCACTCTTGTACTAATGTTTGGAGAGATATTGCCACAAGCAATCTGCACACGCTATGGCTTGACAGTTGGAGCAACAATGGCACCCC TTGTCCGTGTTCTTGTCATTGTCTTCTACCCTGTTGCATATCCAATCAGTAAGGTCTTGGATTGGATGTTGGGCAAAGGGCATGCAGCTCTTTTGCGGAG AGCAGAACTGAAGACTTTTGTTAATTTTCATGCCAACGAGGCTGGGAAAGGTGGAGATTTGACACATGACGAGACCACTATAATCACTGGAGCACTTGAT ATGACTGAAAAGACTGCTAAAGATGCCATGACACCGATATCGAAGGCATTTTCCCTTGATCTGGATGCAGTTCTTAATTTGGAGACATTGAATGCAATAA TGACAATAGGTCACAGTAGAGTCCCAGTTTATGCCGGAAGTCCGACAAATATAATTGGACTCATCCTGGTGAAAAACCTACTGACAGTTGACCCCAGAGA TTCCGTTCCTGTCAGAAAGATGACTATAAGGAAAATAACTAGGGTTTCTGAGGACATACCTCTATATGATATCCTGAATGAGTTTCAGAAGGGTCACAGC CACATTGCTGTTGTTTACAAAGATTGGCATTTGAGCAAAAGAGATGCCCAACAGTTTGAACTTAACAATAGCAGCAGGAAGAACGACCAAATTGAGACAT CCCTTACAAAAGGTGATAATGAGGTTGGAGCTGCCACCGCTTCCGAAAATGCGACAGATGATAGGAGTCAACTGAACAAGAAGAATCCGCCAGTGATTCC TTCCTTTAAGAAACGGCACAGAGGATGTTCATACTGTATCTTGGACATTGAAAATTCTCCAATACCAGAATTCCCATTGAATGAAGAAGTGGTTGGTGTG ATAACCATGGAAGATGTGATTGAAGAACTCCTTCAGCTTCACAATCTTACCTGGCACCAACCCGGTTATGTTGTGCCATTACAGGAAGAGATATTAGATG AAACGGATGAATACGTGAACCTCCATAACAGGATTAAGATAAACATGAACGGGTCTCCTTCTCCGCCACAGCCTTCAGGTGGAAACCCTGCATTTGTAAC TGATGCCGGAACCCCGTCGACATCCGGACCATCAGTAACTGTGTCTGTGTCAACGGGGAGTTCCTCAGGTACCTCACCGACTCATGGCCATGATGTTGCA AGCAATGAGGGAAGGTTATAG
AA sequence Show only first row Show all	>Lus10032715 pacid=23158944 polypeptide=Lus10032715 locus=Lus10032715.g ID=Lus10032715.BGIv1.0 annot-version=v1.0 MADDLPCCGTQFSLYVLAIIGLVVFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRKYAAKIFPVVKNQHLLLCTLLIGNALAMEALPICLDKLAPPYIA VLVSVTLVLMFGEILPQAICTRYGLTVGATMAPLVRVLVIVFYPVAYPISKVLDWMLGKGHAALLRRAELKTFVNFHANEAGKGGDLTHDETTIITGALD MTEKTAKDAMTPISKAFSLDLDAVLNLETLNAIMTIGHSRVPVYAGSPTNIIGLILVKNLLTVDPRDSVPVRKMTIRKITRVSEDIPLYDILNEFQKGHS HIAVVYKDWHLSKRDAQQFELNNSSRKNDQIETSLTKGDNEVGAATASENATDDRSQLNKKNPPVIPSFKKRHRGCSYCILDIENSPIPEFPLNEEVVGV ITMEDVIEELLQLHNLTWHQPGYVVPLQEEILDETDEYVNLHNRIKINMNGSPSPPQPSGGNPAFVTDAGTPSTSGPSVTVSVSTGSSSGTSPTHGHDVA SNEGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	8.3	0.9022
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	8.7	0.8816
AT5G42710			unknown protein		Lus10010807 [exp]	8.9	0.9084
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10012782 [exp]	9.9	0.8916
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	13.0	0.9048
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	15.3	0.8918
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	19.2	0.8917
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	20.4	0.8750
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	21.3	0.8940
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	21.4	0.8857

Compare expression of checked genes

Lus10032715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.