Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19430 825 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 528 / 5e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 519 / 2e-175 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 522 / 4e-175 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 509 / 1e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 425 / 2e-141 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 407 / 6e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 344 / 6e-109 Putative methyltransferase family protein (.1) AT2G39750 338 / 2e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 329 / 2e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000716 [exp] 929 / 0 AT1G19430 795 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 528 / 1e-178 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 526 / 1e-177 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029736 [exp] 522 / 3e-176 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019644 [exp] 512 / 8e-174 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 513 / 5e-173 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 507 / 2e-170 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028354 [exp] 510 / 3e-170 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 506 / 3e-169 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260600 [exp] 886 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 540 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 533 / 5e-180 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 529 / 2e-178 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 526 / 2e-177 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 512 / 2e-170 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 511 / 5e-169 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 435 / 2e-144 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 332 / 1e-104 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 328 / 4e-103 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032717 pacid=23159000 polypeptide=Lus10032717 locus=Lus10032717.g ID=Lus10032717.BGIv1.0 annot-version=v1.0 ATGGCGTTAGCTAGATTAGCTCGCCAGGCTAAACGCCCATTTGGGCTATGCGTCAAGATGACTGCAGTAGGTATACTGGGTCTCTGCTTCATTTTTGTTT GGTCAATTTTCTCGTCTCCTTCCTCTTCAGTCACCACTCAGAGGGAAAGCTTCGATGACATTGCCGAACCTGTTTCTTCCCGATCTCGGTCCACACTGCA TCCGGTCAACGACAACACTTGGAATCGGCCTTCCCAATCTAAAGTCTTGGAATCCAACGCAACAGATGAGGTTGATAAGAAGGCTAATGGGTCCGTTTCT TCTGTGGGCAACGAAGACCATCGAAATCAGCAGCACACTTCCACTTCTGCTGAAAAAAAGCTTCCAGCTTTAGAGGAGACTGATGGAAATGGACAAGAGG AGGAGGATAATTCTGGTATTGAAGATGAACAAGGGCAAGCGATAGATGGAAAAGAGGAGACTGATGTTAATCGTGACGATTCAGTACTAGTGAGTGAAGG AGAAGGGGAAGAAGATGTTGGAAAGGTTGAAAGGAAGAAGAAGAAGGCGACCAAGTCTAAAGGTCCTGTGTTTGATCCAAAGGGACAATATAGTTGGAGG TTGTGCCACAGAAGAAGCAAATTCAACTACATCCCTTGTATTGATATGGAGACCGTCAATATTAATGGAAAGATGCAAAGCTATAGGCATACCGAGAGGA GCTGTCCTAGAAACCCTTTGATGTGTCTTGTGCCTTTACCTCACGAGGGTTACGCATCTCCTGTTCGTTGGCCAGAGAGCAAGCTCAAGGTGTTGTACAA GAACGTTGGGCATCCGAAGCTTGCTGATTTTGTAAATAGAAGAAGTTGGGTGGTGCGTTCTGGTGAATATCTCACGTTTCCTCAGAATCAGACTCAATTC AAGGGCGGAGTTCAGCATTACCTTGATTTCATTGAGGAGATGGTACCAGATATTGAATGGGGAAAGAACATTCGCCTAGTTATGGACGTTGGATGTTCAG ATTCCAGCTTTGCAGCTTCTCTAATTGACAAGGATGTGCTAACTTTATCACTCGGGCTGAAAGATGATGTAGTTGACATAGCTCAGGTTTCCCTTGAACG TGGGTTTCCTGCAATTGTTAGCCCATTTGGGAACAGAAGACTCCCCTTCCCTAGTGGTGTGTTTGATGTTATTCATTGTTTCAGCTGTGGCATTCCGTGG CATTCTAATGCCATGACTAAGTTAACTGCATCGCTCTGCTGGAACATCCTGGCTCATAAAACCGACGAGGACAGTGATGTGGGTATTAAGATATATCAGA AGCCTGATTCAAATGACATATATGAACTTAGAAGGAAGAAGAACCCGCCTATGTGCAAAGAAACTGAGAATCCAGATGCTGCTTGGTATGTTCCTATGAA GATGTGCTTGCATCCTATTCCATCTTCGATTGAACAACGTGGGACCGAGTGGCCTGTGGACTGGCCAAAGAGGCTTGAGGCTTATCCTGAATGGATGAGC AACAAAGAGAGACTAGTTGCTGACTCAGGTCACTGGAAAGCAATCGTTGACAAGTCCTATCTTTCTGGAATTGGTATTGACTGGTCAAGTATTCGGAATG TGATGGACATGAAAGCCATCCATGGAGGATTTGCTGCAGCATTGTCACAAACACAGAAGAACCTGTGGGTGATGAATGTAGTCCCAGTACATGCACCAGA CACGCTTCCAATCGTATATGAACGTGGTCTCATCGGAATCTATCATGATTGGTGCGAATCTTTCAGCACATATCCAAGATCATATGATCTCTTACACGCA GATCATCTGTTTTCGCGGCTGAAGAACAGGTGTAAGCAGCCTGTTTCAATCGTTGTGGAGATGGACCGAATATTGAGACCCGGTGGGTGGGTGATAGTAA GAGACAAGGTTGGGATCTTGGTTCCATTGGAGGAGATACTGAGGAGTTTGAAATGGGAGATCAGGATGAGTTATGCTCAGCATAAAGAGGGTATACTATG CGCTCAGAAAACCATGTGGAGGCCTTAA
AA sequence Show only first row Show all	>Lus10032717 pacid=23159000 polypeptide=Lus10032717 locus=Lus10032717.g ID=Lus10032717.BGIv1.0 annot-version=v1.0 MALARLARQAKRPFGLCVKMTAVGILGLCFIFVWSIFSSPSSSVTTQRESFDDIAEPVSSRSRSTLHPVNDNTWNRPSQSKVLESNATDEVDKKANGSVS SVGNEDHRNQQHTSTSAEKKLPALEETDGNGQEEEDNSGIEDEQGQAIDGKEETDVNRDDSVLVSEGEGEEDVGKVERKKKKATKSKGPVFDPKGQYSWR LCHRRSKFNYIPCIDMETVNINGKMQSYRHTERSCPRNPLMCLVPLPHEGYASPVRWPESKLKVLYKNVGHPKLADFVNRRSWVVRSGEYLTFPQNQTQF KGGVQHYLDFIEEMVPDIEWGKNIRLVMDVGCSDSSFAASLIDKDVLTLSLGLKDDVVDIAQVSLERGFPAIVSPFGNRRLPFPSGVFDVIHCFSCGIPW HSNAMTKLTASLCWNILAHKTDEDSDVGIKIYQKPDSNDIYELRRKKNPPMCKETENPDAAWYVPMKMCLHPIPSSIEQRGTEWPVDWPKRLEAYPEWMS NKERLVADSGHWKAIVDKSYLSGIGIDWSSIRNVMDMKAIHGGFAAALSQTQKNLWVMNVVPVHAPDTLPIVYERGLIGIYHDWCESFSTYPRSYDLLHA DHLFSRLKNRCKQPVSIVVEMDRILRPGGWVIVRDKVGILVPLEEILRSLKWEIRMSYAQHKEGILCAQKTMWRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	0	1
AT5G61200			unknown protein		Lus10003464 [exp]	4.5	0.9185
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	9.7	0.9201
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	10.1	0.8960
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	10.5	0.9056
AT5G17070			unknown protein		Lus10002137 [exp]	13.0	0.8936
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	15.0	0.9152
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	18.4	0.8948
AT2G43140	bHLH	bHLH129	basic helix-loop-helix (bHLH) ...		Lus10026733 [exp]	18.8	0.8753
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	20.7	0.9164
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	22.0	0.9103

Compare expression of checked genes

Lus10032717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.