Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16230 429 / 9e-149 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 409 / 8e-141 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 334 / 2e-112 Glycosyl hydrolase family 17 protein (.1) AT5G24318 313 / 6e-104 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 258 / 3e-82 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 245 / 1e-77 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G32860 242 / 1e-76 Glycosyl hydrolase superfamily protein (.1) AT5G56590 242 / 7e-76 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 239 / 3e-75 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 235 / 1e-73 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012080 [exp] 634 / 0 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 459 / 4e-161 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 457 / 1e-160 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 300 / 6e-99 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 295 / 5e-96 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 288 / 1e-93 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 284 / 1e-92 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 279 / 2e-90 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 272 / 5e-88 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261800 [exp] 483 / 2e-170 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 463 / 6e-163 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 462 / 2e-162 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 391 / 3e-135 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 388 / 8e-134 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 387 / 8e-133 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 386 / 8e-133 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 383 / 1e-131 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 382 / 4e-131 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184100 [exp] 377 / 9e-131 AT2G16230 362 / 1e-122 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10032719 pacid=23159049 polypeptide=Lus10032719 locus=Lus10032719.g ID=Lus10032719.BGIv1.0 annot-version=v1.0 ATGATCACCGTCGGTAACGAGGTTTTCTCTTCTGCCGACCAGAACGTCATGAACAACCTCCTCCCGGCCATCCAGAATGTGCACAACGCCCTCATTTCCG CTTCCCTCGGCGACAAGATCAAGGTCTCCACCGTTCATTCCATGGCGGTGATGAAACAATCGGAGCCCCCCTCAGCAGGAATGTTCGATCCGGGATCATC TGTCTTGATGAAGGGTCTATTGGAATTCAACAAGGCCACAGGCTCCCCCTTCGCAATCAACCCCTACCCGTACTTCGCATACCGAGACGATCCACGACCC GAAACCCTATCGTTTTGCCTATTCCAGCCGAATTCGGGTCGGGTCGACGGAAACACGAAAATTAGGTACATGAACATGTGGGATGCCCAATTGGACGCGA TCCACTCGGCACTAAACGCCGCCGGATTTAAAGAGGTGGAGATTCTGGTAGCGGAAACAGGATGGCCTTACAGAGGAGATGGGAACGAGGTCGGACCAAC CGTGGAGAACGCTAAGGCTTATAACGGCAACTTGATTGCCCACCTCAGATCTATGGTCGGAACGCCGCTCATGCCACGGAAATCAATCGATACATTTATT TTCGCAATGTATGACGAGGATTTGAAATCTGGGCCGGGATCCGAACGGGGTTTCGGGCTCTTTAACTCAGACCTCACTGCAACTTATGACGTCGGATTAA TGAGGACCGAAAACAAAAACTACAGCAGTGCCAGTCAGATGAGCCTAATACCGACGGCGGCTCCAGCTCCGAAAGTGGCGAAAACAAAAGGAGAGTGGTG CCTGCCTAAGAAAGGAGTGAAAGAGGCCGAGCTTCAGGCCAATGTGGATCACGCATGCGGTCAAAATGGGGTCAATTGTAGCCCAATCCAACCCGGCGGG CCTTGCTTCGAGCCTAATACGGAGACGTCGCATGCGGTTTACGCTATGAACCTCTTGTTTCATAATTTGGGAGGATGGAGTTGTGATTTCTTACATACCG ACATTCTCTCCACCAAAAATCCTAGCTACAATACTTGCGACTATCCCAGTGGGAGTTGA
AA sequence Show only first row Show all	>Lus10032719 pacid=23159049 polypeptide=Lus10032719 locus=Lus10032719.g ID=Lus10032719.BGIv1.0 annot-version=v1.0 MITVGNEVFSSADQNVMNNLLPAIQNVHNALISASLGDKIKVSTVHSMAVMKQSEPPSAGMFDPGSSVLMKGLLEFNKATGSPFAINPYPYFAYRDDPRP ETLSFCLFQPNSGRVDGNTKIRYMNMWDAQLDAIHSALNAAGFKEVEILVAETGWPYRGDGNEVGPTVENAKAYNGNLIAHLRSMVGTPLMPRKSIDTFI FAMYDEDLKSGPGSERGFGLFNSDLTATYDVGLMRTENKNYSSASQMSLIPTAAPAPKVAKTKGEWCLPKKGVKEAELQANVDHACGQNGVNCSPIQPGG PCFEPNTETSHAVYAMNLLFHNLGGWSCDFLHTDILSTKNPSYNTCDYPSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	0	1
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	2.2	0.9227
AT1G52140			unknown protein		Lus10025828 [exp]	3.2	0.9211
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	6.9	0.9058
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	8.7	0.8999
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	10.2	0.8781
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	10.5	0.8982
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	13.0	0.8632
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	13.7	0.8918
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	13.8	0.8895
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	14.1	0.8424

Compare expression of checked genes

Lus10032719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.