Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42950 656 / 0 GYF domain-containing protein (.1) AT1G27430 111 / 3e-24 GYF domain-containing protein (.1) AT1G24300 110 / 9e-24 GYF domain-containing protein (.1.2) AT5G08430 46 / 0.0003 SWIB/MDM2 domain;Plus-3;GYF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012078 [exp] 2868 / 0 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1) Lus10035191 [exp] 161 / 2e-39 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2) Lus10032021 [exp] 136 / 1e-31 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2) Lus10003139 [exp] 114 / 7e-25 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10011331 [exp] 112 / 2e-24 AT1G27430 718 / 0.0 GYF domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G262300 [exp] 1438 / 0 AT5G42950 714 / 0.0 GYF domain-containing protein (.1) Potri.001G326700 [exp] 137 / 6e-32 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.001G326500 [exp] 134 / 3e-31 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.017G069220 [exp] 134 / 5e-31 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.004G161700 [exp] 47 / 0.0002 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10032720 pacid=23158998 polypeptide=Lus10032720 locus=Lus10032720.g ID=Lus10032720.BGIv1.0 annot-version=v1.0 ATGGCCAGCGCCTTCGCTTCCTCCGATTCCCGCCGCCCACCATCCCTCACTCATCCTCACCAGATTTCCAAAGATGGTCAAGCTTCTGACAATCCGATTC CTCTTTCTCCTCAGTGGCTTTTACCAAAGCCAGGCGACAATAAGCCTGGGGCAGGAACTGGGGAACTCCATTTTGGCTCTCATCCAACCCATGATAATCG CGCAGATTGCATCAAGTCTTCTGCTAATGGCGAAGAGATGCATGATATCCATAAGAAGAAGGATGTTTTCAGACCTTCACTGTTTGACATGGAAACTGGT CGTCGTGATCGCTGGCGTGATGAGGAAAGGGATACCAATTTTTCTGTCCGGACAGATCCCTGGAGGGATGGTGATAAAGAGGTTGGTGACAGCAAACAAG TTGATCGCTGGGTGGATAATTCCTCCGGTAGGCATTATGAAGCCCGGCGTGCCCCTACTGAGCGCTGGACTGATTCGGGTAACAGAGACAACAACCATGA TCAGCGCCGTGAGAGCAAGTGGAACACTCGCTGGGGACCTGATGATAAGGAGGCAGATGGTTCCCGTGAGAAATGGACAGATTCTAGCAAAGATGTTGAT GTTCCTCACGAGAGAGGCTTGGGCGTCCTTCCCACACAGGGTAAGGATGATCGCGAGATCGATCATAGTCGGCCCTGGAGATCTAATCTTCCTCAAAGTC GGAAGGGAGATATTCCTCACCAGACGCCTCCATCAAACAAACAGCGGCCTATGTTTCCATATGGAAGAGGACGTGGAGAAAGTAGTTCGACCTTTTCTGC CGGTCGTGGGAGGATTGGTGTGGGTGGAAATAATCTAGTGAGCGTCCCTACTCATCCTCAACCCCTAGGTGCCATCCTGGATAAGGCTGAAAATTTCCCT TTAATATATGGCCGGACGAAATTGCTCGACTTGTTCAGAAGGACTGACATGAGGTCTTCTTGGAATCTCTTGGATGGATTTGTCCATGTGCCATCTCTTA CGCAGGAAGAAATGGTGGAGCCACTTGCTTTACGCTCACCTGAACCAGAGGAAATGGCTGTGTTGACGGGAATCGAAAAGGGGGATATAATAAGTAGTAG CGCCCCTCAAATGTCAAAAGATGGATCCATGTCACGGAACATGATGGATTTCTCTAATTCAAGAAGGACCAAGCCAGGCAGCATGGAAGATGGAACTTCT GTTGATGAGAACCTGAAAGGTGGATTTCAGAATTATGTAGACGACTCATCCAACGAGAGGCCATTACTATTCTCTGGTCCCAACTCTAAGTTCGATTCTT TGCAGGATCAAATGATACAACCTGAAAACAGGTTCAAACATGAAGCTCCCCGAGAGGAGGTGGCAGTTAGCAGGGAATTGAGTTTACAGGGAAACAATTC TGCACCTCATGCTGCACCATGGCGATCTCCATCGTTGGGAGAGAAATTACATGCTTTCTCTCATGAGCGAAGGGATATTTCTGATAAGAAAAACTGGACT TCTTCTCACAAGGATGTCAATACTCAATGGGAAAGCAATTTTGTCGGTCAATCATATTCCAATGATCAACTGAAGGTGCAACATGGTGAGGATCCAGTTC TCAAACGACAGTTGTCTGCAGTGCTGGATAGAGAACAAGAAGCGAGGAAGCTTTTGCAGCAATCTCCTGAGAATCTAATTCTCTATTATAAAGATCCTCA GGGCGCTATCCAAGGCCCATTTTCTGGTAGTGATATAATTGGATGGTTTGAAGCTGGATACTTTGGCATTGAGTTGCAAGTCCGCGTAGCAACTGCATCC AAAGATGTGCCATTTTCAGCACTTGGTGATATAATGCCTCATTTAAGAGCGAAGGCAAGGCCACCTCCTGGGTTTGCTGAGCCAAAGCAAAATGAAATGT CAGAGCTAACAAATAGGCCGACTTTTGGTAGCTTCGGACATGCTAGTACAGGTGTAAGTGAAGTTGATGTACTTAGAAATGAACCCATGCATAAAACTGG GTCAACTACGGAAGCTGAAAATAGATTTTTGGAGTCACTGATGGCTGGAAACTTGGGCAGCATGGGCAATACATCCCAAGGTGTGCAAGCCTTTGTTGCT GCAAATAGTTCTGGAGGAATGGTGCCATCTGGAGTAGATGGTGGAAATGACCTACACCTCTTGGCAAGGAAAATGGCCCTTGACCGACAGAGATCAATTC CCAGTACGCATCCATATTGGTCAGGAATGGATCCTTCACCTGTGGTATCAAATTCTGAGGGTGTATCTGACAGATCTGTTTCTGGTTGGTTTAATTTCCC TGTCCAAAATAACTTAGATCCTCTCGAGGGTAAGATTGACTTCCGTAACGAGCAAATTTTCCCTCCACAAGCCCCGTTTGTGCAGCAGCAAAGGCTGCAG CCTGAAAACTTAGCACCTCTAGCGAATTTAATTGGTCGGGCTATGGATAATCAACCGTCTATGATGGGACCTGATAAGATATTACAATCAGGTTTGTCAC AAGATCCACAAGTACTGAGTATGATGCAGCAGCAATATTTGCTACAGTTGCAACACCAAGCTTCTCTTCCTACACAGCAGCTGTCCGTTTTAGACAAGCT TTTCTTACTTAAGCAACAACAGAAACAGGAGGAGGAGCAGCAGTTGTTGCGGCAACAACAGCTTCTTTCTCAGGTTTTGTTGGAGCAACATTCTCTCCAG CAGTTCAGTGAGCATTCCTATGGCCATTTGCAGACTGCTTCAATGGCTTCTGGAAGTTCATCGGTTGATACTTCTGTACTTCAACCCTCAAAGGGCATGT TTGAGATAGGTTCACGGTTGCCAGTTTCTAGCATTCAAGATGAGCGCATATCCAAGTCCATCAACCTTCCTCAAGTTGGGCACGATGCCAGTGACAATGC TGATACAAAATCATCCTCTGTCCATCTTCCTCATCAATTGCTAGATAACATTAATGCTCCTAAAACTTTCGGTGGCATTCTGCCTGACCAAGTTGATGAT TTCCATGAAAACAGATCCTTGCCTGCATCTGGATCTGTTGAAAGCTCACTATCATATGGGGCAGCAAAACCGCCTTCAGTTTATAGTTCTCTTCATCATG ATAGTGTTCCTTCTCAATTACAGGCTGCTGATTCCCCGCTGCGTAGAGCAGTGGATACTTTGGGAACTGAGGATGTTAAAAAAGTTGTTAGTTCTGAATC CATTTCTGATTCTGCTCATCCACTGTTTGCTCAAACCACCAAGGCTGAAATATCAGCAGAAAGTGAACCTGGAATGCCTGAAAGCCCTAAGGTTCCGTAT CAGGGATTGCAGCAAGCTGTTCAAGAGATAATTAATATTGAGTCTGTTGAGGAGTTAAAAAGCGCTGAACTTCGTGAAGTGAAAAAAACATCTGAAAAGA AATCCAGGAAACAGAAGGCTGTCAAGTCTACTTCCTCATCTGACCAGTCCAAATCTGCACGAAAGGAAAAATCCTTGGAAGCTGCTGGTGACTCCAAGTT AGAATCAGTTGATGAAACTGTGAGAAAGTTACATGCGCCGTCTCCACGAAAGAAGAAAGACAATAAATTGGGTAGTTCCTCTGTTGAAAATGTGGAAAAT CAACAGGTTAAGCATTCGATTTCAACTGTTGTGTCACAGGATGATGATGATTTTGCTGAAACTAAGAGCGAAGTCAAGGTAGTATCTCCAACCCCGGTGC AAAATTTACCAAGCCTCTCAGCTCAACGAGCTTGGAAACCTGCTCCTGGTTTCAGACCCAAGTCATTGTTGGAAATTCAACAAGAAGAACAAAGGAAGGT TCACATAGAAGTCTCCGAGACCATTTCAGCTCCTTGGTCTGGAGTTATTAGTGGTTTTGAATCTAGACTTACCCGAGAAACACAGCTTGGAGCAAGTAAC ACAAACTCTTATGCAGGAAAGACAGGAATTTTAGCGGATTCAAAAGGTAAGAAAAGCCAGTTACATGATCTGTTGGCCGAAGAAGTTTTGGCCAAGAATG ATGATTCTGAAATGGAGTTGCGGGAAAGTGTGTCTGGCACATCTTCCCAACTACTAGCAACTAGCGTTGCGGAACTAGTGGATGATAACAACTTTATCGA GGCTAAGGACACCAAAAAGAGTCGCAAAAAGTCTGGCAAGGGAAAGGGTGCTTTAGCGAAAGTGACAGTGCCTCAAGCTTCTGCTGATATACCAATTAGC TCTAGTCCAGGTGAGAAAGTCAAGGGATCCCGTGCTGTGCAACAAGAGAAGGAAGTATTGCCTGCAATTCCCTCAGGTCCTTCTTTTGGCGATTTTGTTT TGTGGAAAGATGAATCCTCGAATCCTCCGCCCTCTCCTGCATGGTCTGCTGACTCGAAGAAGGTTCCTAGACCCACCTCCTTGAGGGACATTTTGAAGGA GCAAGAGAAACGGACTTCTTCTGTTCAACCTCAGATTCCGGTTCCAACTCCTCAGAAGTCGCAGCCTACGCAAGTAGGAATACATGCGAGTGGTCCTGCG TGGTTGCTATCTACTGCTTGTCCATCCAAGGTGGCTTCTCCTATCCAGATTAGCACAACTTCTCAGTCAAAGCGTAAGGAAGATGACGACTTATTCTGGG GTCCAGTTCCACAGTCCAAACATGAACCCAAGCAGTCAGAATACCCTCAACTTGCCAGCCAAGGAAGTTGGGGAACCATAACTACACCTGCCAATGCAAC GCTTGCTGGATCATTAAGCCGTCAGAAGTCTGCATCTCCTGCACAGACTTCTGTGAAAGGGAAGAAAAATGCAGAAAAAAATAAGCAAGCAGAGGCAATC GGTTTCAGAGATTGGTGTGAAAGCGAGTGTGTTAGACTGATCGGGTCAAAAGATACAAGCTTCTTGGAGTTCTGCTTGAAGCAATCGAGATCAGAAGCGG AGACGTTGCTGGTTGAGAATCTTGGATCCTTTGACCCAAATCACCAGTTCATTGAAAAATTCCTGAATTATAAGGAGTTGCTGCCGGCAGATGTTGTTGA CATAGCATTTCAAGGTCGGAAGGTGAGTGCCGGAAACATGAGTTATAACAATAATGCAGTCTTCATTAAGAACTTGGAGCTAGATGCAGCAGGTTCTGCA GATGGATTGTCAAAGGGGGGAGGAGCGAAGAAGAAAGGGAAGAGAGGGAAGAAGGTTAGCTCTGCAGTTTTGGGTTTTAACGTGGTGAGCAACAGAATCA ATATGGGAGAGATTCAAACAGCTGAGGATTAA
AA sequence Show only first row Show all	>Lus10032720 pacid=23158998 polypeptide=Lus10032720 locus=Lus10032720.g ID=Lus10032720.BGIv1.0 annot-version=v1.0 MASAFASSDSRRPPSLTHPHQISKDGQASDNPIPLSPQWLLPKPGDNKPGAGTGELHFGSHPTHDNRADCIKSSANGEEMHDIHKKKDVFRPSLFDMETG RRDRWRDEERDTNFSVRTDPWRDGDKEVGDSKQVDRWVDNSSGRHYEARRAPTERWTDSGNRDNNHDQRRESKWNTRWGPDDKEADGSREKWTDSSKDVD VPHERGLGVLPTQGKDDREIDHSRPWRSNLPQSRKGDIPHQTPPSNKQRPMFPYGRGRGESSSTFSAGRGRIGVGGNNLVSVPTHPQPLGAILDKAENFP LIYGRTKLLDLFRRTDMRSSWNLLDGFVHVPSLTQEEMVEPLALRSPEPEEMAVLTGIEKGDIISSSAPQMSKDGSMSRNMMDFSNSRRTKPGSMEDGTS VDENLKGGFQNYVDDSSNERPLLFSGPNSKFDSLQDQMIQPENRFKHEAPREEVAVSRELSLQGNNSAPHAAPWRSPSLGEKLHAFSHERRDISDKKNWT SSHKDVNTQWESNFVGQSYSNDQLKVQHGEDPVLKRQLSAVLDREQEARKLLQQSPENLILYYKDPQGAIQGPFSGSDIIGWFEAGYFGIELQVRVATAS KDVPFSALGDIMPHLRAKARPPPGFAEPKQNEMSELTNRPTFGSFGHASTGVSEVDVLRNEPMHKTGSTTEAENRFLESLMAGNLGSMGNTSQGVQAFVA ANSSGGMVPSGVDGGNDLHLLARKMALDRQRSIPSTHPYWSGMDPSPVVSNSEGVSDRSVSGWFNFPVQNNLDPLEGKIDFRNEQIFPPQAPFVQQQRLQ PENLAPLANLIGRAMDNQPSMMGPDKILQSGLSQDPQVLSMMQQQYLLQLQHQASLPTQQLSVLDKLFLLKQQQKQEEEQQLLRQQQLLSQVLLEQHSLQ QFSEHSYGHLQTASMASGSSSVDTSVLQPSKGMFEIGSRLPVSSIQDERISKSINLPQVGHDASDNADTKSSSVHLPHQLLDNINAPKTFGGILPDQVDD FHENRSLPASGSVESSLSYGAAKPPSVYSSLHHDSVPSQLQAADSPLRRAVDTLGTEDVKKVVSSESISDSAHPLFAQTTKAEISAESEPGMPESPKVPY QGLQQAVQEIINIESVEELKSAELREVKKTSEKKSRKQKAVKSTSSSDQSKSARKEKSLEAAGDSKLESVDETVRKLHAPSPRKKKDNKLGSSSVENVEN QQVKHSISTVVSQDDDDFAETKSEVKVVSPTPVQNLPSLSAQRAWKPAPGFRPKSLLEIQQEEQRKVHIEVSETISAPWSGVISGFESRLTRETQLGASN TNSYAGKTGILADSKGKKSQLHDLLAEEVLAKNDDSEMELRESVSGTSSQLLATSVAELVDDNNFIEAKDTKKSRKKSGKGKGALAKVTVPQASADIPIS SSPGEKVKGSRAVQQEKEVLPAIPSGPSFGDFVLWKDESSNPPPSPAWSADSKKVPRPTSLRDILKEQEKRTSSVQPQIPVPTPQKSQPTQVGIHASGPA WLLSTACPSKVASPIQISTTSQSKRKEDDDLFWGPVPQSKHEPKQSEYPQLASQGSWGTITTPANATLAGSLSRQKSASPAQTSVKGKKNAEKNKQAEAI GFRDWCESECVRLIGSKDTSFLEFCLKQSRSEAETLLVENLGSFDPNHQFIEKFLNYKELLPADVVDIAFQGRKVSAGNMSYNNNAVFIKNLELDAAGSA DGLSKGGGAKKKGKRGKKVSSAVLGFNVVSNRINMGEIQTAED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	0	1
AT3G55160			unknown protein		Lus10007253 [exp]	2.6	0.9717
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	3.2	0.9692
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	4.9	0.9664
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	4.9	0.9609
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	5.5	0.9582
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	5.7	0.9666
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	6.9	0.9621
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	7.0	0.9619
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	7.3	0.9607
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	8.4	0.9663

Compare expression of checked genes

Lus10032720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.