Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036295 [exp] 100 / 2e-27 ND / Lus10027769 [exp] 73 / 6e-17 ND / Lus10024774 [exp] 61 / 6e-12 ND / Lus10009869 [exp] 54 / 1e-09 ND / Lus10036152 [exp] 52 / 2e-09 ND / Lus10001990 [exp] 53 / 4e-09 ND / Lus10022955 [exp] 50 / 9e-09 ND / Lus10029523 [exp] 44 / 8e-06 ND / Lus10010245 [exp] 43 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032721 pacid=23158963 polypeptide=Lus10032721 locus=Lus10032721.g ID=Lus10032721.BGIv1.0 annot-version=v1.0 ATGTATAAACAAGTGGAAAGTAATGTCAATGTTCTAACCAATGATAATTCACAGATTGGTCCAAATGATGTTGTGGGGAGATGCTATGATGGAAAAGAGA AGCAGGGCCTAGAAGCATTCGATGGTCAGTTTACTAAAACCATCTATTTGGAAGAGTATATGTGTTTGGTTCGAGTTCACGCAACACACAAAGTCTTTTC CCTCCGAGAGTTCAAGTCGAGGACTCGGTCCTGCTACATGTACTCTCTCCCTTGCAAAATTTTAGAAGAAAACTTGTACTCTCTCCCTCGAGTTGCAGGC AATGGCTCGAGTCTTGGAAGGTTCTCTAAATGTACCGGGCTAACCCCCTCTTCCAGATCGTTGGGAGCTTCTAGAGGAAAGACACATGTCGATAGTAGCC CACCAGCTGAGGAGGGGGAGGAGGATGATGATGAAGACGAGTAG
AA sequence Show only first row Show all	>Lus10032721 pacid=23158963 polypeptide=Lus10032721 locus=Lus10032721.g ID=Lus10032721.BGIv1.0 annot-version=v1.0 MYKQVESNVNVLTNDNSQIGPNDVVGRCYDGKEKQGLEAFDGQFTKTIYLEEYMCLVRVHATHKVFSLREFKSRTRSCYMYSLPCKILEENLYSLPRVAG NGSSLGRFSKCTGLTPSSRSLGASRGKTHVDSSPPAEEGEEDDDEDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032721 [exp]	0	1
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10000596 [exp]	5.3	0.6871
AT1G18060			unknown protein		Lus10012667 [exp]	5.3	0.7589
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Lus10026732 [exp]	5.5	0.7553
AT1G68490			unknown protein		Lus10027557 [exp]	9.6	0.7605
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	10.8	0.7465
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	18.0	0.7204
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	19.4	0.7107
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	21.0	0.7236
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	24.4	0.7329
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	28.8	0.7260

Compare expression of checked genes

Lus10032721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.